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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    54001 1ump:A (2.13) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54002 1ump:A (2.13) BS02 SQA 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54003 1ump:B (2.13) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54004 1ump:B (2.13) BS02 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54005 1ump:B (2.13) BS03 SQA 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54006 1ump:C (2.13) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54007 1ump:C (2.13) BS02 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54008 1ump:C (2.13) BS03 SQA 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 15113001
    54009 1ums:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8580839
    54010 1ums:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8580839
    54011 1ums:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8580839
    54012 1ums:A (-1.00) BS04 0DS 3.4.24.17 GO:0004222 ... P08254 8580839 BindingDB: Ki=127nM
    54013 1umt:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8580839
    54014 1umt:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8580839
    54015 1umt:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8580839
    54016 1umt:A (-1.00) BS04 0DS 3.4.24.17 GO:0004222 ... P08254 8580839 BindingDB: Ki=127nM
    54017 1umv:X (1.79) BS01 CA 3.1.1.4 GO:0004623 ... Q8AXY1 15351695
    54018 1umw:A (1.9) BS01 peptide 2.7.11.21 N/A P53350 14532005
    54019 1umw:B (1.9) BS01 peptide 2.7.11.21 N/A P53350 14532005
    54020 1umw:B (1.9) BS02 peptide 2.7.11.21 N/A P53350 14532005
    54021 1umx:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 14741581
    54022 1umx:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 14741581
    54023 1umx:L (2.8) BS03 BPB ? GO:0009772 ... P0C0Y8 14741581
    54024 1umx:L (2.8) BS04 BCL ? GO:0009772 ... P0C0Y8 14741581
    54025 1umx:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 14741581
    54026 1umx:L (2.8) BS06 BPB ? GO:0009772 ... P0C0Y8 14741581
    54027 1umx:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 14741581
    54028 1umx:M (2.8) BS02 BPB ? GO:0009772 ... P0C0Y9 14741581
    54029 1umx:M (2.8) BS03 BCL ? GO:0009772 ... P0C0Y9 14741581
    54030 1umx:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 14741581
    54031 1umx:M (2.8) BS05 FE ? GO:0009772 ... P0C0Y9 14741581
    54032 1umx:M (2.8) BS06 BPB ? GO:0009772 ... P0C0Y9 14741581
    54033 1umx:M (2.8) BS07 SPN ? GO:0009772 ... P0C0Y9 14741581
    54034 1umx:M (2.8) BS08 U10 ? GO:0009772 ... P0C0Y9 14741581
    54035 1umy:A (2.5) BS01 ZN 2.1.1.5 GO:0005634 ... O09171 15099744
    54036 1umy:B (2.5) BS01 ZN 2.1.1.5 GO:0005634 ... O09171 15099744
    54037 1umy:C (2.5) BS01 ZN 2.1.1.5 GO:0005634 ... O09171 15099744
    54038 1umy:D (2.5) BS01 ZN 2.1.1.5 GO:0005634 ... O09171 15099744
    54039 1umz:A (1.8) BS01 BGC 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54040 1umz:A (1.8) BS02 GAL 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54041 1umz:B (1.8) BS01 BGC 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54042 1umz:B (1.8) BS02 BGC 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54043 1umz:B (1.8) BS03 XYS 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54044 1umz:B (1.8) BS04 XYS 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54045 1umz:B (1.8) BS05 GAL 2.4.1.207 GO:0004553 ... Q8GZD5 15020748
    54046 1un0:A (2.6) BS01 peptide ? GO:0005737 ... Q02821 14532109
    54047 1un0:B (2.6) BS01 peptide ? GO:0005737 ... Q02821 14532109
    54048 1un6:B (3.1) BS01 rna ? N/A P03001 14603324
    54049 1un6:B (3.1) BS02 ZN ? N/A P03001 14603324
    54050 1un6:B (3.1) BS03 ZN ? N/A P03001 14603324
    54051 1un6:B (3.1) BS04 ZN ? N/A P03001 14603324
    54052 1un6:C (3.1) BS01 rna ? N/A P03001 14603324
    54053 1un6:C (3.1) BS02 rna ? N/A P03001 14603324
    54054 1un6:C (3.1) BS03 ZN ? N/A P03001 14603324
    54055 1un6:C (3.1) BS04 ZN ? N/A P03001 14603324
    54056 1un6:C (3.1) BS05 ZN ? N/A P03001 14603324
    54057 1un6:C (3.1) BS06 MG ? N/A P03001 14603324
    54058 1un6:D (3.1) BS01 rna ? N/A P03001 14603324
    54059 1un6:D (3.1) BS02 ZN ? N/A P03001 14603324
    54060 1un6:D (3.1) BS03 ZN ? N/A P03001 14603324
    54061 1un9:A (3.1) BS01 ANP 2.7.1.29 GO:0004371 ... P45510 12966101
    54062 1un9:A (3.1) BS02 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    54063 1un9:A (3.1) BS03 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    54064 1un9:A (3.1) BS04 2HA 2.7.1.29 GO:0004371 ... P45510 12966101
    54065 1un9:B (3.1) BS01 ANP 2.7.1.29 GO:0004371 ... P45510 12966101
    54066 1un9:B (3.1) BS02 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    54067 1un9:B (3.1) BS03 MG 2.7.1.29 GO:0004371 ... P45510 12966101
    54068 1un9:B (3.1) BS04 2HA 2.7.1.29 GO:0004371 ... P45510 12966101
    54069 1unb:A (1.5) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 14718929
    54070 1unb:A (1.5) BS02 AKG 1.14.20.1 GO:0005506 ... P18548 14718929
    54071 1unb:A (1.5) BS03 PN1 1.14.20.1 GO:0005506 ... P18548 14718929
    54072 1une:A (1.5) BS01 CA 3.1.1.4 GO:0002227 ... P00593 10089393
    54073 1unf:X (1.97) BS01 FE 1.15.1.1 GO:0004784 ... Q9M7R2 15659371
    54074 1ung:A (2.3) BS01 ALH 2.7.11.1 GO:0000226 ... Q00535 15689152 MOAD: ic50=0.18uM
    PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    BindingDB: IC50=200nM
    54075 1ung:B (2.3) BS01 ALH 2.7.11.1 GO:0000226 ... Q00535 15689152 MOAD: ic50=0.18uM
    BindingDB: IC50=200nM
    54076 1unh:A (2.35) BS01 IXM 2.7.11.1 GO:0000226 ... Q00535 15689152 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    54077 1unh:B (2.35) BS01 IXM 2.7.11.1 GO:0000226 ... Q00535 15689152 MOAD: ic50=0.1uM
    54078 1unl:A (2.2) BS01 RRC 2.7.11.1 GO:0000226 ... Q00535 15689152 PDBbind: -logKd/Ki=6.70, IC50=0.20uM
    BindingDB: IC50=160nM, Kd=1900nM
    54079 1unq:A (0.98) BS01 4IP 2.7.11.1 N/A P31749 12964941
    54080 1uns:A (2.0) BS01 ZN ? GO:0005576 ... P34071 14559915
    54081 1uns:A (2.0) BS02 ZN ? GO:0005576 ... P34071 14559915
    54082 1uny:B (2.3) BS01 peptide ? GO:0003700 ... P03069 16008357
    54083 1uo4:B (1.7) BS01 PIH ? GO:0003700 ... P03069 16008357
    54084 1uo5:A (2.07) BS01 PIH ? GO:0003700 ... P03069 16008357
    54085 1uo6:A (1.65) BS01 XE 3.4.21.36 GO:0004252 ... P00772 14684889
    54086 1uo9:A (1.5) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 14718929
    54087 1uob:A (1.7) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 14718929
    54088 1uob:A (1.7) BS02 PNN 1.14.20.1 GO:0005506 ... P18548 14718929
    54089 1uob:A (1.7) BS03 AKG 1.14.20.1 GO:0005506 ... P18548 14718929
    54090 1uoc:A (2.3) BS01 CA 3.1.13.4 GO:0003676 ... P39008 14618157
    54091 1uoc:B (2.3) BS01 CA 3.1.13.4 GO:0003676 ... P39008 14618157
    54092 1uod:A (1.9) BS01 G3H 2.7.1.121 GO:0004371 ... P76015 15476397 PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    54093 1uod:B (1.9) BS01 G3H 2.7.1.121 GO:0004371 ... P76015 15476397
    54094 1uoe:A (2.0) BS01 GOL 2.7.1.121 GO:0004371 ... P76015 15476397
    54095 1uoe:B (2.0) BS01 GOL 2.7.1.121 GO:0004371 ... P76015 15476397
    54096 1uof:A (1.6) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 14718929
    54097 1uof:A (1.6) BS02 PNN 1.14.20.1 GO:0005506 ... P18548 14718929
    54098 1uog:A (1.7) BS01 P1C 1.14.20.1 GO:0005506 ... P18548 14718929
    54099 1uog:A (1.7) BS02 FE2 1.14.20.1 GO:0005506 ... P18548 14718929
    54100 1uol:A (1.9) BS01 ZN ? GO:0000976 ... P04637 14534297
    54101 1uol:B (1.9) BS01 ZN ? GO:0000976 ... P04637 14534297
    54102 1uom:A (2.28) BS01 PTI ? N/A P03372 12825935 MOAD: ic50=19nM
    PDBbind: -logKd/Ki=7.72, IC50=19nM
    BindingDB: IC50=19nM, EC50=16.5nM
    54103 1uon:A (7.6) BS01 rna 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54104 1uon:A (7.6) BS02 rna 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54105 1uon:A (7.6) BS03 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54106 1uon:A (7.6) BS04 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54107 1uon:A (7.6) BS05 CH1 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54108 1uon:A (7.6) BS06 MN 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54109 1uon:A (7.6) BS07 MN 2.7.7.48 GO:0001172 ... Q8V1A3 14608373
    54110 1uoo:A (2.35) BS01 peptide 3.4.21.26 GO:0004252 ... P23687 14514675
    54111 1uop:A (1.85) BS01 peptide 3.4.21.26 GO:0004252 ... P23687 14514675
    54112 1uoq:A (2.1) BS01 peptide 3.4.21.26 GO:0004252 ... P23687 14514675
    54113 1uou:A (2.11) BS01 CMU 2.4.2.4 GO:0000002 ... P19971 14725767 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    BindingDB: IC50=35nM, Ki=20nM
    54114 1uov:A (1.65) BS01 CA ? GO:0016020 ... P21707 15340165
    54115 1uov:A (1.65) BS02 CA ? GO:0016020 ... P21707 15340165
    54116 1uov:A (1.65) BS03 CA ? GO:0016020 ... P21707 15340165
    54117 1uow:A (1.04) BS01 CA ? GO:0016020 ... P21707 15340165
    54118 1uow:A (1.04) BS02 CA ? GO:0016020 ... P21707 15340165
    54119 1uoz:A (1.1) BS01 SSG 3.2.1.- GO:0004553 ... Q79G13 15824123
    54120 1uoz:A (1.1) BS02 GLC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54121 1up0:A (1.75) BS01 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54122 1up0:A (1.75) BS02 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54123 1up2:A (1.9) BS01 IFM 3.2.1.- GO:0004553 ... Q79G13 15824123
    54124 1up2:A (1.9) BS02 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54125 1up2:A (1.9) BS03 IFM 3.2.1.- GO:0004553 ... Q79G13 15824123
    54126 1up2:A (1.9) BS04 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54127 1up3:A (1.6) BS01 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54128 1up3:A (1.6) BS02 BGC 3.2.1.- GO:0004553 ... Q79G13 15824123
    54129 1up5:A (1.9) BS01 CA ? GO:0005509 ... P62149 15299715
    54130 1up5:A (1.9) BS02 CA ? GO:0005509 ... P62149 15299715
    54131 1up5:A (1.9) BS03 CA ? GO:0005509 ... P62149 15299715
    54132 1up5:A (1.9) BS04 CA ? GO:0005509 ... P62149 15299715
    54133 1up5:B (1.9) BS01 CA ? GO:0005509 ... P62149 15299715
    54134 1up5:B (1.9) BS02 CA ? GO:0005509 ... P62149 15299715
    54135 1up5:B (1.9) BS03 CA ? GO:0005509 ... P62149 15299715
    54136 1up5:B (1.9) BS04 CA ? GO:0005509 ... P62149 15299715
    54137 1up6:A (2.55) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54138 1up6:A (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54139 1up6:A (2.55) BS03 G6P 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54140 1up6:A (2.55) BS04 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54141 1up6:A (2.55) BS05 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54142 1up6:C (2.55) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54143 1up6:C (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54144 1up6:C (2.55) BS03 G6P 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54145 1up6:G (2.55) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54146 1up6:G (2.55) BS02 MN 3.2.1.86 GO:0003824 ... Q9X108 15237973
    54147 1up7:A (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54148 1up7:A (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54149 1up7:B (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54150 1up7:B (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54151 1up7:C (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54152 1up7:C (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54153 1up7:D (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54154 1up7:D (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54155 1up7:E (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54156 1up7:E (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54157 1up7:F (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54158 1up7:F (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54159 1up7:G (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54160 1up7:G (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54161 1up7:H (2.4) BS01 NAD 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54162 1up7:H (2.4) BS02 G6P 3.2.1.86 GO:0003824 ... Q9X108 15670594
    54163 1up8:A (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    54164 1up8:B (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    54165 1up8:C (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    54166 1up8:D (2.2) BS01 CA 1.11.1.18 GO:0004601 ... O81959 15776268
    54167 1up9:A (1.35) BS01 HEC ? GO:0009055 ... Q9L915 14705030
    54168 1up9:A (1.35) BS02 HEC ? GO:0009055 ... Q9L915 14705030
    54169 1up9:A (1.35) BS03 HEC ? GO:0009055 ... Q9L915 14705030
    54170 1up9:A (1.35) BS04 HEC ? GO:0009055 ... Q9L915 14705030
    54171 1up9:A (1.35) BS05 SO4 ? GO:0009055 ... Q9L915 14705030
    54172 1upa:A (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54173 1upa:A (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54174 1upa:A (2.35) BS03 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54175 1upa:A (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54176 1upa:A (2.35) BS05 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54177 1upa:B (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54178 1upa:B (2.35) BS02 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54179 1upa:B (2.35) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54180 1upa:B (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54181 1upa:B (2.35) BS05 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54182 1upa:C (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54183 1upa:C (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54184 1upa:C (2.35) BS03 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54185 1upa:C (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54186 1upa:C (2.35) BS05 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54187 1upa:D (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54188 1upa:D (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54189 1upa:D (2.35) BS03 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54190 1upa:D (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54191 1upb:A (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54192 1upb:A (2.35) BS02 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54193 1upb:A (2.35) BS03 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54194 1upb:A (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54195 1upb:A (2.35) BS05 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54196 1upb:B (2.35) BS01 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54197 1upb:B (2.35) BS02 TPP 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54198 1upb:B (2.35) BS03 MG 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54199 1upb:B (2.35) BS04 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876
    54200 1upb:B (2.35) BS05 SO4 2.5.1.66 GO:0000287 ... Q9LCV9 14623876

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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