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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    53401 1ubh:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53402 1ubh:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53403 1ubh:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53404 1ubh:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53405 1ubj:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53406 1ubj:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53407 1ubj:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53408 1ubj:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53409 1ubj:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53410 1ubj:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53411 1ubj:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53412 1ubk:L (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53413 1ubk:L (1.18) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53414 1ubk:L (1.18) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53415 1ubk:L (1.18) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53416 1ubk:S (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53417 1ubk:S (1.18) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53418 1ubk:S (1.18) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53419 1ubl:L (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53420 1ubl:L (1.2) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53421 1ubl:L (1.2) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53422 1ubl:L (1.2) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53423 1ubl:S (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53424 1ubl:S (1.2) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53425 1ubl:S (1.2) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53426 1ubm:L (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53427 1ubm:L (1.4) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53428 1ubm:L (1.4) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53429 1ubm:S (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53430 1ubm:S (1.4) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53431 1ubm:S (1.4) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53432 1ubn:A (2.4) BS01 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    53433 1ubn:A (2.4) BS02 CA 3.4.21.62 GO:0004252 ... P00782 10350485
    53434 1ubo:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53435 1ubo:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53436 1ubo:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53437 1ubo:L (1.35) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53438 1ubo:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53439 1ubo:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53440 1ubo:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53441 1ubp:C (1.65) BS01 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    53442 1ubp:C (1.65) BS02 NI 3.5.1.5 GO:0005737 ... P41020 N/A
    53443 1ubr:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53444 1ubr:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53445 1ubr:L (1.34) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53446 1ubr:L (1.34) BS04 CMO 1.12.2.1 GO:0008901 ... P21852 12296727
    53447 1ubr:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53448 1ubr:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53449 1ubr:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53450 1ubs:B (1.9) BS01 SER 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    53451 1ubs:B (1.9) BS02 PLP 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    53452 1ubt:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53453 1ubt:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53454 1ubt:L (1.34) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53455 1ubt:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53456 1ubt:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53457 1ubt:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53458 1ubu:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    53459 1ubu:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    53460 1ubu:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    53461 1ubu:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53462 1ubu:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    53463 1ubu:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    53464 1ubw:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53465 1ubw:A (2.5) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53466 1ubw:A (2.5) BS03 GPP 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53467 1ubx:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53468 1ubx:A (2.5) BS02 FPP 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53469 1uby:A (2.4) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53470 1uby:A (2.4) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53471 1uby:A (2.4) BS03 DMA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    53472 1ubz:A (2.0) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 12720276
    53473 1uc0:A (1.85) BS01 GAL 3.2.1.17 GO:0003796 ... P00698 12720276
    53474 1uc2:A (2.15) BS01 GLC 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 16485279
    53475 1uc2:A (2.15) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 16485279
    53476 1uc2:B (2.15) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 16485279
    53477 1uc3:A (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53478 1uc3:B (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53479 1uc3:C (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53480 1uc3:D (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53481 1uc3:E (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53482 1uc3:F (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53483 1uc3:G (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53484 1uc3:H (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53485 1uc3:I (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53486 1uc3:J (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53487 1uc3:K (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53488 1uc3:L (2.3) BS01 HEM ? GO:0005344 ... P02207 N/A
    53489 1uc4:A (1.8) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    53490 1uc4:B (1.8) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 12684496
    53491 1uc4:E (1.8) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 12684496
    53492 1uc4:L (1.8) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    53493 1uc5:A (2.3) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    53494 1uc5:B (2.3) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 12684496
    53495 1uc5:E (2.3) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 12684496
    53496 1uc5:L (2.3) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 12684496
    53497 1uc9:A (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    53498 1uc9:B (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    53499 1uca:A (1.48) BS01 U2P 4.6.1.19 GO:0003723 ... P23540 10964705
    53500 1ucc:A (1.77) BS01 U3P 4.6.1.19 GO:0003723 ... P23540 10964705
    53501 1ucd:A (1.3) BS01 U5P 4.6.1.19 GO:0003723 ... P23540 N/A
    53502 1ucd:A (1.3) BS02 URA 4.6.1.19 GO:0003723 ... P23540 N/A
    53503 1ucn:A (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    53504 1ucn:A (2.0) BS02 CA 2.7.4.6 GO:0000287 ... P15531 12972261
    53505 1ucn:A (2.0) BS03 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    53506 1ucn:B (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    53507 1ucn:B (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    53508 1ucn:C (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    53509 1ucn:C (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    53510 1ucq:A (2.4) BS01 RET ? GO:0005216 ... P02945 14672661
    53511 1ucr:A (1.2) BS01 SO4 ? N/A Q46582 12962631
    53512 1ucr:A (1.2) BS02 SO4 ? N/A Q46582 12962631
    53513 1ucr:B (1.2) BS01 SO4 ? N/A Q46582 12962631
    53514 1ucr:B (1.2) BS02 SO4 ? N/A Q46582 12962631
    53515 1ucy:E (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    53516 1ucy:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    53517 1ucy:K (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    53518 1ucy:N (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 8855938
    53519 1ud2:A (2.13) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53520 1ud2:A (2.13) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53521 1ud2:A (2.13) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53522 1ud3:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53523 1ud3:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53524 1ud4:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53525 1ud4:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53526 1ud4:A (2.15) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53527 1ud5:A (2.7) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53528 1ud5:A (2.7) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53529 1ud8:A (2.88) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53530 1ud8:A (2.88) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53531 1ud8:A (2.88) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    53532 1ud9:A (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    53533 1ud9:A (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    53534 1ud9:A (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    53535 1ud9:B (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    53536 1ud9:B (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    53537 1ud9:B (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    53538 1ud9:C (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    53539 1ud9:C (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    53540 1ud9:D (1.68) BS01 ZN ? GO:0003677 ... Q975N2 N/A
    53541 1ud9:D (1.68) BS02 ZN ? GO:0003677 ... Q975N2 N/A
    53542 1ud9:D (1.68) BS03 ZN ? GO:0003677 ... Q975N2 N/A
    53543 1ud9:D (1.68) BS04 ZN ? GO:0003677 ... Q975N2 N/A
    53544 1uda:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    53545 1uda:A (1.8) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.4mM
    53546 1udb:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    53547 1udb:A (1.65) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.2mM
    53548 1udc:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    53549 1udc:A (1.65) BS02 UFM 5.1.3.2 GO:0003978 ... P09147 9174344
    53550 1udh:A (1.75) BS01 URA 3.2.2.27 GO:0004844 ... P10186 7845459
    53551 1udt:A (2.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    53552 1udt:A (2.3) BS02 VIA 3.1.4.35 GO:0004114 ... O76074 12955149 MOAD: Kd~0.5nM
    PDBbind: -logKd/Ki=9.30, Kd=0.5nM
    BindingDB: IC50=2.2nM, Ki=1.9nM, EC50=8.7nM
    53553 1udu:A (2.83) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    53554 1udu:A (2.83) BS02 CIA 3.1.4.35 GO:0004114 ... O76074 12955149 PDBbind: -logKd/Ki=9.05, Kd=0.9nM
    BindingDB: IC50=4nM, Ki=10nM
    53555 1udu:B (2.83) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 12955149
    53556 1udu:B (2.83) BS02 MG 3.1.4.35 GO:0004114 ... O76074 12955149
    53557 1udu:B (2.83) BS03 CIA 3.1.4.35 GO:0004114 ... O76074 12955149 BindingDB: IC50=4nM, Ki=10nM
    53558 1udv:A (1.85) BS01 ZN ? GO:0003676 ... Q97ZF4 12837780
    53559 1udw:A (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53560 1udw:B (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53561 1udy:A (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53562 1udy:A (2.4) BS02 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    53563 1udy:A (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53564 1udy:B (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53565 1udy:B (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53566 1udy:B (2.4) BS03 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    53567 1udy:C (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53568 1udy:C (2.4) BS02 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    53569 1udy:C (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53570 1udy:D (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53571 1udy:D (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    53572 1udy:D (2.4) BS03 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    53573 1ue0:A (2.0) BS01 VAL 6.1.1.5 GO:0002161 ... P56690 14672940
    53574 1ue8:A (3.0) BS01 HEM 1.14.-.- GO:0004497 ... Q972I2 15219985
    53575 1uea:A (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    53576 1uea:A (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    53577 1uea:A (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53578 1uea:A (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53579 1uea:A (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53580 1uea:C (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    53581 1uea:C (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    53582 1uea:C (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53583 1uea:C (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53584 1uea:C (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    53585 1ued:A (1.9) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN03 12888556
    53586 1ued:B (1.9) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN03 12888556
    53587 1uef:A (2.5) BS01 peptide ? N/A P97465 14607833
    53588 1uef:B (2.5) BS01 peptide ? N/A P97465 14607833
    53589 1ueh:A (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    53590 1ueh:A (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    53591 1ueh:B (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    53592 1ueh:B (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    53593 1ueh:B (1.73) BS03 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    53594 1ueh:B (1.73) BS04 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    53595 1uei:A (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53596 1uei:B (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53597 1uej:A (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53598 1uej:B (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    53599 1uer:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    53600 1uer:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P19665 12962504
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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