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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    52401 1txo:A (1.95) BS02 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    52402 1txo:A (1.95) BS03 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    52403 1txo:B (1.95) BS01 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    52404 1txo:B (1.95) BS02 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    52405 1txo:B (1.95) BS03 MN 3.1.3.16 GO:0004722 ... P9WHW5 15530359
    52406 1txr:A (2.0) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 15274616
    52407 1txr:A (2.0) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 15274616
    52408 1txr:A (2.0) BS03 BES 3.4.11.10 GO:0006508 ... Q01693 15274616 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    BindingDB: IC50=1.6nM, Ki=1.6nM
    52409 1txt:A (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    52410 1txt:B (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    52411 1txt:C (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    52412 1txt:D (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    52413 1txu:A (2.35) BS01 MG ? GO:0005085 ... Q9UJ41 15339665
    52414 1txx:A (2.2) BS01 CU 1.8.-.- GO:0005515 ... P0AA25 10489448
    52415 1txz:A (2.05) BS01 APR 3.1.3.84 GO:0005575 ... Q04299 15722447
    52416 1ty2:A (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    52417 1ty2:B (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    52418 1ty2:C (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    52419 1ty4:A (2.2) BS01 peptide ? GO:0042981 ... P41958 15383288
    52420 1ty4:B (2.2) BS01 peptide ? GO:0042981 ... P41958 15383288
    52421 1ty4:B (2.2) BS02 peptide ? GO:0042981 ... P41958 15383288
    52422 1ty8:A (2.1) BS01 ADP 3.1.3.84 GO:0005575 ... Q04299 N/A
    52423 1ty9:A (1.8) BS01 FMN 1.10.3.16 GO:0002047 ... Q51793 15502343
    52424 1ty9:A (1.8) BS02 FMN 1.10.3.16 GO:0002047 ... Q51793 15502343
    52425 1ty9:B (1.8) BS01 FMN 1.10.3.16 GO:0002047 ... Q51793 15502343
    52426 1ty9:B (1.8) BS02 FMN 1.10.3.16 GO:0002047 ... Q51793 15502343
    52427 1tya:E (2.8) BS01 TYR 6.1.1.1 GO:0000166 ... P00952 N/A
    52428 1tyb:E (2.5) BS01 TYR 6.1.1.1 GO:0000166 ... P00952 N/A
    52429 1tyd:E (2.5) BS01 TYR 6.1.1.1 GO:0000166 ... P00952 2504923
    52430 1tye:A (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    52431 1tye:A (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    52432 1tye:A (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    52433 1tye:A (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    52434 1tye:B (2.9) BS01 MG ? N/A P05106 15378069
    52435 1tye:B (2.9) BS02 CA ? N/A P05106 15378069
    52436 1tye:B (2.9) BS03 CA ? N/A P05106 15378069
    52437 1tye:C (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    52438 1tye:C (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    52439 1tye:C (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    52440 1tye:C (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    52441 1tye:D (2.9) BS01 MG ? N/A P05106 15378069
    52442 1tye:D (2.9) BS02 CA ? N/A P05106 15378069
    52443 1tye:D (2.9) BS03 CA ? N/A P05106 15378069
    52444 1tye:E (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    52445 1tye:E (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    52446 1tye:E (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    52447 1tye:E (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    52448 1tye:F (2.9) BS01 MG ? N/A P05106 15378069
    52449 1tye:F (2.9) BS02 CA ? N/A P05106 15378069
    52450 1tye:F (2.9) BS03 CA ? N/A P05106 15378069
    52451 1tyg:A (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    52452 1tyg:C (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    52453 1tyl:B (1.9) BS01 peptide ? GO:0005179 ... P01308 8090735
    52454 1tyl:B (1.9) BS02 peptide ? GO:0005179 ... P01308 8090735
    52455 1tyn:A (2.0) BS01 CTA 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    52456 1tyo:A (2.15) BS01 ENP 1.1.1.42 GO:0000166 ... Q9YE81 15581899
    52457 1typ:A (2.8) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 8477734
    52458 1typ:A (2.8) BS02 NAP 1.8.1.12 GO:0004362 ... P39040 8477734
    52459 1typ:A (2.8) BS03 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52460 1typ:A (2.8) BS04 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    52461 1typ:A (2.8) BS05 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52462 1typ:A (2.8) BS06 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52463 1typ:B (2.8) BS01 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52464 1typ:B (2.8) BS02 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52465 1typ:B (2.8) BS03 FAD 1.8.1.12 GO:0004362 ... P39040 8477734
    52466 1typ:B (2.8) BS04 NAP 1.8.1.12 GO:0004362 ... P39040 8477734
    52467 1typ:B (2.8) BS05 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    52468 1typ:B (2.8) BS06 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    52469 1tyq:A (2.55) BS01 ATP ? GO:0003779 ... P61157 15505213
    52470 1tyq:B (2.55) BS01 ATP ? GO:0003779 ... A7MB62 15505213
    52471 1tyr:A (1.8) BS01 9CR ? GO:0005179 ... P02766 8536704 MOAD: Kd=0.1uM
    52472 1tyr:B (1.8) BS01 9CR ? GO:0005179 ... P02766 8536704 MOAD: Kd=0.1uM
    52473 1tys:A (1.8) BS01 TMP 2.1.1.45 GO:0000287 ... P0A884 8312270 PDBbind: -logKd/Ki=5.49, Kd=3.27uM
    52474 1tys:A (1.8) BS02 DHF 2.1.1.45 GO:0000287 ... P0A884 8312270 MOAD: Kd=3.27uM
    52475 1tyt:A (2.6) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 15299452
    52476 1tyt:B (2.6) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 15299452
    52477 1tyu:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    52478 1tyu:A (1.8) BS02 MAN 3.2.1.- N/A P12528 8855221
    52479 1tyu:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    52480 1tyu:A (1.8) BS04 TYV 3.2.1.- N/A P12528 8855221
    52481 1tyw:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    52482 1tyw:A (1.8) BS02 MAN 3.2.1.- N/A P12528 8855221
    52483 1tyw:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    52484 1tyw:A (1.8) BS04 GLA 3.2.1.- N/A P12528 8855221
    52485 1tyw:A (1.8) BS05 TYV 3.2.1.- N/A P12528 8855221
    52486 1tyw:A (1.8) BS06 GLC 3.2.1.- N/A P12528 8855221
    52487 1tyx:A (1.8) BS01 RAM 3.2.1.- N/A P12528 8855221
    52488 1tyx:A (1.8) BS02 MAN 3.2.1.- N/A P12528 8855221
    52489 1tyx:A (1.8) BS03 GLA 3.2.1.- N/A P12528 8855221
    52490 1tyx:A (1.8) BS04 GLA 3.2.1.- N/A P12528 8855221
    52491 1tyx:A (1.8) BS05 ABE 3.2.1.- N/A P12528 8855221
    52492 1tyz:A (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52493 1tyz:B (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52494 1tyz:C (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52495 1tyz:D (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52496 1tz2:A (2.1) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52497 1tz2:A (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    52498 1tz2:B (2.1) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52499 1tz2:B (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    52500 1tz2:C (2.1) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52501 1tz2:C (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    52502 1tz2:D (2.1) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52503 1tz2:D (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    52504 1tz3:A (2.9) BS01 AIS 2.7.1.223 GO:0005524 ... Q8ZKR2 15458630
    52505 1tz6:A (2.7) BS01 ACP 2.7.1.223 GO:0005524 ... Q8ZKR2 15458630
    52506 1tz6:A (2.7) BS02 AIS 2.7.1.223 GO:0005524 ... Q8ZKR2 15458630
    52507 1tz6:B (2.7) BS01 ACP 2.7.1.223 GO:0005524 ... Q8ZKR2 15458630
    52508 1tz8:A (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    52509 1tz8:B (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    52510 1tz8:C (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    52511 1tz8:D (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    52512 1tzc:A (1.45) BS01 PA5 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15252053
    52513 1tzc:B (1.45) BS01 PA5 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15252053
    52514 1tzd:A (2.2) BS01 ADP 2.7.1.127 GO:0016301 ... P17105 15350215
    52515 1tzd:B (2.2) BS01 ADP 2.7.1.127 GO:0016301 ... P17105 15350215
    52516 1tze:E (2.1) BS01 peptide ? N/A P62993 8673601
    52517 1tzf:A (2.1) BS01 MG 2.7.7.33 GO:0000166 ... Q8Z5I4 15292268
    52518 1tzf:A (2.1) BS02 C5G 2.7.7.33 GO:0000166 ... Q8Z5I4 15292268
    52519 1tzg:H (2.2) BS01 peptide N/A N/A N/A 15723805
    52520 1tzg:I (2.2) BS01 peptide N/A N/A N/A 15723805
    52521 1tzg:L (2.2) BS01 peptide N/A N/A N/A 15723805
    52522 1tzg:M (2.2) BS01 peptide N/A N/A N/A 15723805
    52523 1tzj:A (1.99) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52524 1tzj:A (1.99) BS02 A3B 3.5.99.7 GO:0008660 ... Q00740 15491139
    52525 1tzj:B (1.99) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52526 1tzj:C (1.99) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52527 1tzj:C (1.99) BS02 A3B 3.5.99.7 GO:0008660 ... Q00740 15491139
    52528 1tzj:D (1.99) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52529 1tzk:A (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52530 1tzk:A (2.0) BS02 2KT 3.5.99.7 GO:0008660 ... Q00740 15491139
    52531 1tzk:B (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52532 1tzk:C (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52533 1tzk:C (2.0) BS02 2KT 3.5.99.7 GO:0008660 ... Q00740 15491139
    52534 1tzk:D (2.0) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52535 1tzl:A (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52536 1tzl:B (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52537 1tzl:C (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52538 1tzl:D (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52539 1tzl:E (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52540 1tzl:F (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52541 1tzl:G (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52542 1tzl:H (2.35) BS01 FAD 1.1.3.10 GO:0016614 ... Q8J136 15362852
    52543 1tzm:A (2.08) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52544 1tzm:A (2.08) BS02 C2N 3.5.99.7 GO:0008660 ... Q00740 15491139
    52545 1tzm:A (2.08) BS03 NAK 3.5.99.7 GO:0008660 ... Q00740 15491139
    52546 1tzm:B (2.08) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52547 1tzm:C (2.08) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52548 1tzm:C (2.08) BS02 C2N 3.5.99.7 GO:0008660 ... Q00740 15491139
    52549 1tzm:C (2.08) BS03 NAK 3.5.99.7 GO:0008660 ... Q00740 15491139
    52550 1tzm:D (2.08) BS01 PLP 3.5.99.7 GO:0008660 ... Q00740 15491139
    52551 1tzn:A (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52552 1tzn:A (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52553 1tzn:B (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52554 1tzn:B (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52555 1tzn:C (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52556 1tzn:C (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52557 1tzn:D (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52558 1tzn:D (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52559 1tzn:E (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52560 1tzn:E (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52561 1tzn:F (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52562 1tzn:F (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52563 1tzn:G (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52564 1tzn:G (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52565 1tzn:H (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52566 1tzn:H (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52567 1tzn:I (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52568 1tzn:I (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52569 1tzn:J (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52570 1tzn:J (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52571 1tzn:K (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52572 1tzn:K (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52573 1tzn:L (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52574 1tzn:L (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52575 1tzn:M (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52576 1tzn:M (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52577 1tzn:O (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    52578 1tzn:O (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    52579 1tzn:a (4.3) BS01 MG ? N/A P58335 15326297
    52580 1tzn:b (4.3) BS01 MG ? N/A P58335 15326297
    52581 1tzn:c (4.3) BS01 MG ? N/A P58335 15326297
    52582 1tzn:d (4.3) BS01 MG ? N/A P58335 15326297
    52583 1tzn:e (4.3) BS01 MG ? N/A P58335 15326297
    52584 1tzn:f (4.3) BS01 MG ? N/A P58335 15326297
    52585 1tzn:g (4.3) BS01 MG ? N/A P58335 15326297
    52586 1tzn:h (4.3) BS01 MG ? N/A P58335 15326297
    52587 1tzn:i (4.3) BS01 MG ? N/A P58335 15326297
    52588 1tzn:j (4.3) BS01 MG ? N/A P58335 15326297
    52589 1tzn:k (4.3) BS01 MG ? N/A P58335 15326297
    52590 1tzn:l (4.3) BS01 MG ? N/A P58335 15326297
    52591 1tzn:m (4.3) BS01 MG ? N/A P58335 15326297
    52592 1tzn:o (4.3) BS01 MG ? N/A P58335 15326297
    52593 1tzo:A (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    52594 1tzo:A (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    52595 1tzo:B (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    52596 1tzo:B (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    52597 1tzo:C (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    52598 1tzo:C (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    52599 1tzo:D (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    52600 1tzo:D (3.6) BS02 CA ? GO:0005576 ... P13423 15326297

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218