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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49601 1srf:A (2.0) BS01 MTB ? GO:0009374 ... P22629 N/A
    49602 1srf:B (2.0) BS01 MTB ? GO:0009374 ... P22629 N/A
    49603 1srg:A (1.8) BS01 MHB ? GO:0009374 ... P22629 N/A MOAD: Ka=200000M^-1
    PDBbind: -logKd/Ki=5.30, Kd=5uM
    49604 1srg:B (1.8) BS01 MHB ? GO:0009374 ... P22629 N/A MOAD: Ka=200000M^-1
    49605 1srh:A (2.2) BS01 MOB ? GO:0009374 ... P22629 N/A
    49606 1srh:B (2.2) BS01 MOB ? GO:0009374 ... P22629 N/A
    49607 1sri:A (1.65) BS01 DMB ? GO:0009374 ... P22629 N/A MOAD: Ka=1200000M^-1
    PDBbind: -logKd/Ki=6.08, Kd=0.83uM
    49608 1sri:B (1.65) BS01 DMB ? GO:0009374 ... P22629 N/A MOAD: Ka=1200000M^-1
    PDBbind: -logKd/Ki=6.08, Kd=0.83uM
    49609 1srj:A (1.8) BS01 NAB ? GO:0009374 ... P22629 N/A
    49610 1srj:B (1.8) BS01 NAB ? GO:0009374 ... P22629 N/A
    49611 1srk:A (-1.00) BS01 ZN ? N/A O35615 15234987
    49612 1srn:A (1.8) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 3680234
    49613 1srp:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49614 1srp:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49615 1srp:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49616 1srp:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49617 1srp:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49618 1srp:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49619 1srp:A (2.0) BS07 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    49620 1srp:A (2.0) BS08 ZN 3.4.24.40 GO:0004222 ... P07268 8797082
    49621 1srr:A (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    49622 1srr:C (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    49623 1srs:A (3.2) BS01 dna ? GO:0000981 ... P11831 7637780
    49624 1srs:A (3.2) BS02 dna ? GO:0000981 ... P11831 7637780
    49625 1srs:B (3.2) BS01 dna ? GO:0000981 ... P11831 7637780
    49626 1srs:B (3.2) BS02 dna ? GO:0000981 ... P11831 7637780
    49627 1ss4:B (1.84) BS01 GSH ? GO:0004493 ... Q81F54 N/A
    49628 1ss9:A (2.6) BS01 MN 2.4.1.44 GO:0016740 ... Q93EK7 15075344
    49629 1ss9:A (2.6) BS02 UPF 2.4.1.44 GO:0016740 ... Q93EK7 15075344
    49630 1ssa:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 8142897
    49631 1ssb:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 8142897
    49632 1ssc:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 15299768
    49633 1ssg:A (2.9) BS01 PGA 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00940 15166315
    49634 1ssg:B (2.9) BS01 PGA 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00940 15166315
    49635 1ssh:A (1.4) BS01 peptide ? GO:0006897 ... P43603 N/A
    49636 1ssp:E (1.9) BS01 dna 3.2.2.27 GO:0004844 ... P13051 9724657 PDBbind: Kd=48nM
    49637 1ssp:E (1.9) BS02 URA 3.2.2.27 GO:0004844 ... P13051 9724657
    49638 1ssq:A (1.85) BS01 CYS 2.3.1.30 GO:0005737 ... P43886 15147185 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1uM
    49639 1ssq:D (1.85) BS01 CYS 2.3.1.30 GO:0005737 ... P43886 15147185
    49640 1sst:A (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49641 1sst:A (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49642 1sst:B (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49643 1sst:B (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49644 1sst:C (2.0) BS01 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49645 1sst:C (2.0) BS02 COA 2.3.1.30 GO:0005737 ... P43886 15147185
    49646 1ssx:A (0.83) BS01 SO4 3.4.21.12 GO:0004252 ... P00778 15111063
    49647 1ssx:A (0.83) BS02 SO4 3.4.21.12 GO:0004252 ... P00778 15111063
    49648 1ssx:A (0.83) BS03 SO4 3.4.21.12 GO:0004252 ... P00778 15111063
    49649 1st0:A (1.9) BS01 GTG 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49650 1st0:B (1.9) BS01 GTG 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49651 1st0:B (1.9) BS02 GTG 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49652 1st2:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    49653 1st2:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    49654 1st3:A (1.4) BS01 CA 3.4.21.62 GO:0004252 ... P29599 1453465
    49655 1st3:A (1.4) BS02 CA 3.4.21.62 GO:0004252 ... P29599 1453465
    49656 1st4:A (2.02) BS01 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49657 1st4:B (2.02) BS01 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49658 1st4:B (2.02) BS02 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    49659 1sta:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8019410
    49660 1sta:A (1.7) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8019410
    49661 1stb:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8019410
    49662 1stb:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8019410
    49663 1stc:E (2.3) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 9438863
    49664 1stc:E (2.3) BS02 STU 2.7.11.11 GO:0001669 ... P00517 9438863 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    49665 1std:A (2.9) BS01 BFS 4.2.1.94 GO:0005575 ... P56221 7866745 PDBbind: -logKd/Ki=10.33, Ki=47pM
    BindingDB: Ki=47nM
    49666 1ste:A (2.0) BS01 ZN ? GO:0005576 ... P34071 7582894
    49667 1stg:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 7703245
    49668 1sth:A (1.85) BS01 CO 3.1.31.1 GO:0003676 ... P00644 7703245
    49669 1sth:A (1.85) BS02 THP 3.1.31.1 GO:0003676 ... P00644 7703245
    49670 1sto:A (2.6) BS01 OMP 2.4.2.10 GO:0000287 ... P08870 8312245
    49671 1stp:A (2.6) BS01 BTN ? GO:0005576 ... P22629 2911722 PDBbind: -logKd/Ki=13.40, Kd=40fM
    BindingDB: Kd=1.000000nM
    49672 1stq:A (1.82) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 15236591
    49673 1str:B (1.8) BS01 peptide ? GO:0009374 ... P22629 8537386
    49674 1str:D (1.8) BS01 peptide ? GO:0009374 ... P22629 8537386
    49675 1sts:B (1.95) BS01 peptide ? GO:0009374 ... P22629 8537386
    49676 1sts:D (1.95) BS01 peptide ? GO:0009374 ... P22629 8537386
    49677 1stx:A (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49678 1stx:A (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49679 1stx:A (2.1) BS03 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49680 1stx:A (2.1) BS04 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49681 1stx:A (2.1) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49682 1stx:A (2.1) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49683 1stx:A (2.1) BS07 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49684 1stx:A (2.1) BS08 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49685 1stx:B (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49686 1stx:B (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49687 1stx:B (2.1) BS03 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49688 1stx:B (2.1) BS04 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49689 1stx:B (2.1) BS05 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49690 1stx:B (2.1) BS06 MN 3.1.21.4 GO:0003677 ... P04390 15170321
    49691 1sty:A (1.67) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8475069
    49692 1sty:A (1.67) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8475069
    49693 1su0:B (2.3) BS01 ZN ? GO:0005506 ... Q9A1G2 15815978
    49694 1su1:A (2.25) BS01 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49695 1su1:A (2.25) BS02 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49696 1su1:A (2.25) BS03 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49697 1su1:B (2.25) BS01 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49698 1su1:B (2.25) BS02 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49699 1su1:B (2.25) BS03 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49700 1su1:C (2.25) BS01 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49701 1su1:C (2.25) BS02 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49702 1su1:C (2.25) BS03 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49703 1su1:C (2.25) BS04 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49704 1su1:D (2.25) BS01 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49705 1su1:D (2.25) BS02 ZN 3.1.4.- GO:0005829 ... P67095 17586769
    49706 1su1:D (2.25) BS03 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49707 1su1:D (2.25) BS04 SO4 3.1.4.- GO:0005829 ... P67095 17586769
    49708 1su2:A (1.6) BS01 MG 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49709 1su2:A (1.6) BS02 MG 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49710 1su2:A (1.6) BS03 ATP 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49711 1su2:A (1.6) BS04 ATP 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49712 1su2:B (1.6) BS01 ATP 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49713 1su2:B (1.6) BS02 MG 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49714 1su2:B (1.6) BS03 MG 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49715 1su2:B (1.6) BS04 ATP 3.6.1.61
    3.6.1.69    		 GO:0005524 ... Q9RVK2 15123424
    49716 1su3:A (2.2) BS01 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49717 1su3:A (2.2) BS02 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49718 1su3:A (2.2) BS03 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49719 1su3:A (2.2) BS04 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49720 1su3:A (2.2) BS05 ZN 3.4.24.7 GO:0004175 ... P03956 15611040
    49721 1su3:A (2.2) BS06 ZN 3.4.24.7 GO:0004175 ... P03956 15611040
    49722 1su3:B (2.2) BS01 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49723 1su3:B (2.2) BS02 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49724 1su3:B (2.2) BS03 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49725 1su3:B (2.2) BS04 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    49726 1su3:B (2.2) BS05 ZN 3.4.24.7 GO:0004175 ... P03956 15611040
    49727 1su3:B (2.2) BS06 ZN 3.4.24.7 GO:0004175 ... P03956 15611040
    49728 1su4:A (2.4) BS01 CA 7.2.2.10 GO:0000166 ... P04191 10864315
    49729 1su4:A (2.4) BS02 CA 7.2.2.10 GO:0000166 ... P04191 10864315
    49730 1su5:A (2.7) BS01 PGA 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00940 15166315
    49731 1su5:B (2.7) BS01 PGA 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00940 15166315
    49732 1su6:A (1.64) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49733 1su6:A (1.64) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49734 1su6:A (1.64) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49735 1su7:A (1.12) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49736 1su7:A (1.12) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49737 1su7:A (1.12) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49738 1su8:A (1.1) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49739 1su8:A (1.1) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49740 1su8:A (1.1) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49741 1sua:A (2.1) BS01 peptide 3.4.21.62 GO:0004252 ... P00782 9552156
    49742 1sub:A (1.75) BS01 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    49743 1sud:A (1.9) BS01 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    49744 1sud:A (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    49745 1sue:A (1.8) BS01 DFP 3.4.21.62 GO:0004252 ... P00782 N/A
    49746 1suf:A (1.15) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49747 1suf:A (1.15) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49748 1suf:A (1.15) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    49749 1sui:A (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49750 1sui:A (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49751 1sui:A (2.7) BS03 FRE 2.1.1.104 GO:0008168 ... Q40313 15734921
    49752 1sui:B (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49753 1sui:B (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49754 1sui:C (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49755 1sui:C (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49756 1sui:D (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49757 1sui:D (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49758 1sum:B (2.0) BS01 FE ? GO:0005737 ... Q9X256 15716271
    49759 1sum:B (2.0) BS02 FE ? GO:0005737 ... Q9X256 15716271
    49760 1sum:B (2.0) BS03 FE ? GO:0005737 ... Q9X256 15716271
    49761 1sum:B (2.0) BS04 FE ? GO:0005737 ... Q9X256 15716271
    49762 1sum:B (2.0) BS05 FE ? GO:0005737 ... Q9X256 15716271
    49763 1sum:B (2.0) BS06 FE ? GO:0005737 ... Q9X256 15716271
    49764 1sum:B (2.0) BS07 FE ? GO:0005737 ... Q9X256 15716271
    49765 1sum:B (2.0) BS08 PO3 ? GO:0005737 ... Q9X256 15716271
    49766 1sum:B (2.0) BS09 PO3 ? GO:0005737 ... Q9X256 15716271
    49767 1suo:A (1.9) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 15100217
    49768 1suo:A (1.9) BS02 CPZ 1.14.14.1 GO:0004497 ... P00178 15100217 MOAD: ic50=0.04uM
    49769 1sup:A (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15299573
    49770 1suq:A (3.0) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15115397
    49771 1suq:A (3.0) BS02 185 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15115397
    49772 1sus:A (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49773 1sus:A (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49774 1sus:A (2.7) BS03 SPF 2.1.1.104 GO:0008168 ... Q40313 15734921
    49775 1sus:B (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49776 1sus:B (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49777 1sus:C (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49778 1sus:C (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49779 1sus:D (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    49780 1sus:D (2.7) BS02 SAH 2.1.1.104 GO:0008168 ... Q40313 15734921
    49781 1suv:C (7.5) BS01 CO3 ? GO:0005576 ... P02787 14980223
    49782 1suv:C (7.5) BS02 FE ? GO:0005576 ... P02787 14980223
    49783 1suv:D (7.5) BS01 CO3 ? GO:0005576 ... P02787 14980223
    49784 1suv:D (7.5) BS02 FE ? GO:0005576 ... P02787 14980223
    49785 1suv:E (7.5) BS01 CO3 N/A GO:0005576 ... N/A 14980223
    49786 1suv:E (7.5) BS02 FE N/A GO:0005576 ... N/A 14980223
    49787 1suv:F (7.5) BS01 CO3 N/A GO:0005576 ... N/A 14980223
    49788 1suv:F (7.5) BS02 FE N/A GO:0005576 ... N/A 14980223
    49789 1suw:A (2.45) BS01 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49790 1suw:A (2.45) BS02 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49791 1suw:B (2.45) BS01 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49792 1suw:B (2.45) BS02 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49793 1suw:C (2.45) BS01 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49794 1suw:C (2.45) BS02 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49795 1suw:D (2.45) BS01 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49796 1suw:D (2.45) BS02 NAP 2.7.1.23 GO:0003951 ... O30297 16242716
    49797 1suz:A (1.8) BS01 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49798 1suz:A (1.8) BS02 dna 3.1.21.4 GO:0003677 ... P04390 15170321
    49799 1suz:A (1.8) BS03 MG 3.1.21.4 GO:0003677 ... P04390 15170321
    49800 1suz:A (1.8) BS04 NA 3.1.21.4 GO:0003677 ... P04390 15170321
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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