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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49001 1skw:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49002 1skx:A (2.8) BS01 RFP ? GO:0003677 ... O75469 15705662 BindingDB: EC50=3500nM
    49003 1sl0:A (3.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49004 1sl0:A (3.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49005 1sl0:A (3.2) BS03 DAD 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49006 1sl0:C (3.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49007 1sl0:C (3.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49008 1sl1:A (2.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49009 1sl1:A (2.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49010 1sl2:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49011 1sl2:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49012 1sl2:A (2.3) BS03 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49013 1sl2:A (2.3) BS04 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49014 1sl2:A (2.3) BS05 DAD 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15235589
    49015 1sl3:A (1.81) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15163182
    49016 1sl3:A (1.81) BS02 170 3.4.21.5 GO:0004252 ... P00734 15163182 MOAD: Ki=1.4pM
    PDBbind: -logKd/Ki=11.85, Ki=1.4pM
    BindingDB: Ki=0.001400nM
    49017 1sl4:A (1.55) BS01 MAN ? N/A Q9NNX6 15195147
    49018 1sl4:A (1.55) BS02 MAN ? N/A Q9NNX6 15195147
    49019 1sl4:A (1.55) BS03 CA ? N/A Q9NNX6 15195147
    49020 1sl4:A (1.55) BS04 CA ? N/A Q9NNX6 15195147
    49021 1sl4:A (1.55) BS05 CA ? N/A Q9NNX6 15195147
    49022 1sl5:A (1.8) BS01 FUC ? N/A Q9NNX6 15195147
    49023 1sl5:A (1.8) BS02 CA ? N/A Q9NNX6 15195147
    49024 1sl5:A (1.8) BS03 CA ? N/A Q9NNX6 15195147
    49025 1sl6:A (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49026 1sl6:A (2.25) BS02 CA ? N/A Q9H2X3 15195147
    49027 1sl6:A (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49028 1sl6:A (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49029 1sl6:A (2.25) BS05 CA ? N/A Q9H2X3 15195147
    49030 1sl6:A (2.25) BS06 CA ? N/A Q9H2X3 15195147
    49031 1sl6:B (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49032 1sl6:B (2.25) BS02 GAL ? N/A Q9H2X3 15195147
    49033 1sl6:B (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49034 1sl6:B (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49035 1sl6:B (2.25) BS05 CA ? N/A Q9H2X3 15195147
    49036 1sl6:B (2.25) BS06 CA ? N/A Q9H2X3 15195147
    49037 1sl6:B (2.25) BS07 CA ? N/A Q9H2X3 15195147
    49038 1sl6:C (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49039 1sl6:C (2.25) BS02 CA ? N/A Q9H2X3 15195147
    49040 1sl6:C (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49041 1sl6:C (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49042 1sl6:C (2.25) BS05 CA ? N/A Q9H2X3 15195147
    49043 1sl6:D (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49044 1sl6:D (2.25) BS02 CA ? N/A Q9H2X3 15195147
    49045 1sl6:D (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49046 1sl6:D (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49047 1sl6:D (2.25) BS05 CA ? N/A Q9H2X3 15195147
    49048 1sl6:E (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49049 1sl6:E (2.25) BS02 CA ? N/A Q9H2X3 15195147
    49050 1sl6:E (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49051 1sl6:E (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49052 1sl6:F (2.25) BS01 FUC ? N/A Q9H2X3 15195147
    49053 1sl6:F (2.25) BS02 CA ? N/A Q9H2X3 15195147
    49054 1sl6:F (2.25) BS03 CA ? N/A Q9H2X3 15195147
    49055 1sl6:F (2.25) BS04 CA ? N/A Q9H2X3 15195147
    49056 1sl7:A (2.2) BS01 CA ? GO:0005509 ... Q27709 15689515
    49057 1sl7:A (2.2) BS02 CA ? GO:0005509 ... Q27709 15689515
    49058 1sl7:A (2.2) BS03 CA ? GO:0005509 ... Q27709 15689515
    49059 1sl8:A (1.7) BS01 CA ? GO:0005509 ... P07164 15689515
    49060 1sl8:A (1.7) BS02 CA ? GO:0005509 ... P07164 15689515
    49061 1sl8:A (1.7) BS03 CA ? GO:0005509 ... P07164 15689515
    49062 1sl9:A (1.17) BS01 CZH ? GO:0005509 ... Q27709 N/A
    49063 1sla:A (2.45) BS01 GAL ? GO:0005576 ... P11116 7773775
    49064 1slb:A (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    49065 1slb:C (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    49066 1slc:A (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    49067 1slc:B (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    49068 1sld:B (2.5) BS01 peptide ? GO:0009374 ... P22629 7492542
    49069 1sle:B (2.0) BS01 peptide ? GO:0009374 ... P22629 7492542
    49070 1sle:D (2.0) BS01 peptide ? GO:0009374 ... P22629 7492542
    49071 1slf:B (1.76) BS01 SO4 ? GO:0009374 ... P22629 7492542
    49072 1slf:B (1.76) BS02 SO4 ? GO:0009374 ... P22629 7492542
    49073 1slf:D (1.76) BS01 SO4 ? GO:0009374 ... P22629 7492542
    49074 1slf:D (1.76) BS02 SO4 ? GO:0009374 ... P22629 7492542
    49075 1slg:B (1.76) BS01 peptide ? GO:0009374 ... P22629 7492542
    49076 1slg:D (1.76) BS01 peptide ? GO:0009374 ... P22629 7492542
    49077 1sli:A (2.0) BS01 DAN 4.2.2.15 GO:0004308 ... Q27701 9562562
    49078 1slm:A (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    49079 1slm:A (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    49080 1slm:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    49081 1slm:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    49082 1sln:A (2.27) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    49083 1sln:A (2.27) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    49084 1sln:A (2.27) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    49085 1sln:A (2.27) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    49086 1sln:A (2.27) BS05 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    49087 1sln:A (2.27) BS06 8MI 3.4.24.17 GO:0004222 ... P08254 8535233
    49088 1slt:A (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    49089 1slt:B (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    49090 1slu:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    49091 1slv:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    49092 1slv:B (2.3) BS02 CU 3.4.21.4 GO:0004252 ... P00763 8634241
    49093 1slw:B (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    49094 1slx:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    49095 1slx:B (2.2) BS02 ZN 3.4.21.4 GO:0004252 ... P00763 8634241
    49096 1sly:A (2.8) BS01 BLG 4.2.2.n1 GO:0000270 ... P0AGC3 7548026
    49097 1sm1:1 (3.42) BS01 rna ? GO:0000049 ... Q9RSS4 15059283
    49098 1sm1:A (3.42) BS01 rna ? GO:0002181 ... Q9RXJ9 15059283
    49099 1sm1:B (3.42) BS01 rna ? GO:0003735 ... Q9RXK2 15059283
    49100 1sm1:C (3.42) BS01 rna ? GO:0003735 ... Q9RXK1 15059283
    49101 1sm1:G (3.42) BS01 rna ? GO:0003735 ... Q9RSS7 15059283
    49102 1sm1:H (3.42) BS01 rna ? GO:0003729 ... Q9RXY1 15059283
    49103 1sm1:I (3.42) BS01 rna ? GO:0003735 ... Q9RXJ2 15059283
    49104 1sm1:J (3.42) BS01 rna ? GO:0003735 ... Q9RSK9 15059283
    49105 1sm1:L (3.42) BS01 rna ? GO:0003735 ... Q9RSJ5 15059283
    49106 1sm1:O (3.42) BS01 rna ? GO:0000027 ... Q9RSW7 15059283
    49107 1sm1:P (3.42) BS01 rna ? GO:0003723 ... Q9RY64 15059283
    49108 1sm1:Q (3.42) BS01 rna ? GO:0003735 ... Q9RXJ7 15059283
    49109 1sm1:S (3.42) BS01 rna ? GO:0003723 ... Q9RXJ1 15059283
    49110 1sm1:T (3.42) BS01 rna ? GO:0000049 ... Q9RX88 15059283
    49111 1sm1:X (3.42) BS01 rna ? GO:0003735 ... Q9RSL0 15059283
    49112 1sm1:Y (3.42) BS01 rna ? GO:0000049 ... Q9RW44 15059283
    49113 1sm1:Z (3.42) BS01 rna ? GO:0003735 ... P49228 15059283
    49114 1sm2:A (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    PDBbind: -logKd/Ki=8.00, Ki<10nM
    49115 1sm2:B (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    49116 1sm3:H (1.95) BS01 peptide ? N/A P01801 9826510
    49117 1sm3:L (1.95) BS01 peptide ? GO:0002250 ... P01723 9826510
    49118 1sm4:A (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... Q9M4D2 11053431
    49119 1sm4:B (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... Q9M4D2 11053431
    49120 1sm8:A (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49121 1sm8:A (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49122 1sm8:B (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49123 1sm8:B (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49124 1sm8:C (2.9) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49125 1sm8:C (2.9) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49126 1sm9:A (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    49127 1sm9:B (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    49128 1sm9:C (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    49129 1sm9:D (2.2) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 15320875
    49130 1smc:A (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49131 1smc:A (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49132 1smc:B (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49133 1smc:B (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49134 1smc:C (2.1) BS01 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49135 1smc:C (2.1) BS02 DUT 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49136 1smd:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    49137 1smd:A (1.6) BS02 CL 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    49138 1sme:A (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    49139 1sme:B (2.7) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 8816746
    49140 1smf:E (2.1) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 7798176
    49141 1smf:E (2.1) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7798176
    49142 1smg:A (-1.00) BS01 CA ? GO:0005509 ... P02588 9109645
    49143 1smh:A (2.044) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 15196017
    49144 1smh:A (2.044) BS02 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    49145 1smh:A (2.044) BS03 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    49146 1smh:A (2.044) BS04 BU3 2.7.11.11 GO:0001669 ... P00517 15196017
    49147 1smh:A (2.044) BS05 MG8 2.7.11.11 GO:0001669 ... P00517 15196017
    49148 1smi:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49149 1smi:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49150 1smj:A (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49151 1smj:B (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49152 1smj:C (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49153 1smj:D (2.75) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15020590
    49154 1sml:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    49155 1sml:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 9811546
    49156 1smm:A (1.36) BS01 FE ? GO:0005506 ... P00268 15067525
    49157 1smp:A (2.3) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 7752231
    49158 1smp:A (2.3) BS02 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49159 1smp:A (2.3) BS03 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49160 1smp:A (2.3) BS04 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49161 1smp:A (2.3) BS05 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49162 1smp:A (2.3) BS06 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49163 1smp:A (2.3) BS07 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49164 1smp:A (2.3) BS08 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    49165 1smr:A (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    49166 1smr:C (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    49167 1smr:E (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    49168 1smr:G (2.0) BS01 peptide 3.4.23.15 GO:0004190 ... P00796 8107115
    49169 1smu:A (1.43) BS01 FE2 ? GO:0005506 ... P00268 15067525
    49170 1smv:A (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    49171 1smv:A (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    49172 1smv:B (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    49173 1smv:B (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    49174 1smv:C (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    49175 1smv:C (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    49176 1smw:A (1.38) BS01 FE2 ? GO:0005506 ... P00268 15067525
    49177 1smy:A (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49178 1smy:A (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49179 1smy:A (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49180 1smy:A (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49181 1smy:A (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49182 1smy:B (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49183 1smy:B (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49184 1smy:B (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49185 1smy:B (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49186 1smy:B (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49187 1smy:B (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49188 1smy:B (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49189 1smy:B (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49190 1smy:B (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q9Z9H6 15109491
    49191 1smy:C (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49192 1smy:C (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49193 1smy:C (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49194 1smy:C (2.7) BS04 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49195 1smy:C (2.7) BS05 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49196 1smy:C (2.7) BS06 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49197 1smy:C (2.7) BS07 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49198 1smy:C (2.7) BS08 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49199 1smy:C (2.7) BS09 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49200 1smy:C (2.7) BS10 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218