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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48201 1s7v:A (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    48202 1s7v:D (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    48203 1s7w:A (2.4) BS01 peptide ? GO:0001913 ... P01899 15100292
    48204 1s7w:D (2.4) BS01 peptide ? GO:0001913 ... P01899 15100292
    48205 1s7w:G (2.4) BS01 peptide ? GO:0001913 ... P01899 15100292
    48206 1s7w:J (2.4) BS01 peptide ? GO:0001913 ... P01899 15100292
    48207 1s7w:K (2.4) BS01 peptide ? GO:0001913 ... P01887 15100292
    48208 1s7x:A (2.41) BS01 peptide ? GO:0001913 ... P01899 15100292
    48209 1s7x:D (2.41) BS01 peptide ? GO:0001913 ... P01899 15100292
    48210 1s7x:G (2.41) BS01 peptide ? GO:0001913 ... P01899 15100292
    48211 1s7x:J (2.41) BS01 peptide ? GO:0001913 ... P01899 15100292
    48212 1s7x:K (2.41) BS01 peptide ? GO:0001913 ... P01887 15100292
    48213 1s7y:A (1.75) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    48214 1s7y:B (1.75) BS01 GLU ? GO:0015276 ... P42260 15721240
    48215 1s81:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48216 1s81:A (1.7) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48217 1s81:A (1.7) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48218 1s81:A (1.7) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48219 1s82:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48220 1s82:A (1.85) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48221 1s82:A (1.85) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48222 1s82:A (1.85) BS04 SBE 3.4.21.4 GO:0004252 ... P00761 15005618
    48223 1s83:A (1.25) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48224 1s83:A (1.25) BS02 MG 3.4.21.4 GO:0004252 ... P00761 15005618
    48225 1s83:A (1.25) BS03 4HA 3.4.21.4 GO:0004252 ... P00761 15005618
    48226 1s84:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48227 1s84:A (1.85) BS02 DYB 3.4.21.4 GO:0004252 ... P00761 15005618
    48228 1s85:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48229 1s85:A (2.2) BS02 SBZ 3.4.21.4 GO:0004252 ... P00761 15005618
    48230 1s89:A (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    PDBbind: -logKd/Ki=5.24, Ki=5.8uM
    48231 1s89:B (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    48232 1s89:C (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    48233 1s89:D (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    48234 1s89:E (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    48235 1s89:F (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    PDBbind: -logKd/Ki=5.24, Ki=5.8uM
    48236 1s8a:A (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48237 1s8a:B (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48238 1s8a:C (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48239 1s8a:D (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48240 1s8a:E (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48241 1s8a:F (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    48242 1s8c:A (2.19) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 15049686
    48243 1s8d:A (2.2) BS01 peptide ? N/A P04439 16702212
    48244 1s8e:A (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    48245 1s8e:A (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    48246 1s8e:B (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    48247 1s8e:B (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    48248 1s8f:A (1.77) BS01 GDP ? GO:0003924 ... P24408 15196914
    48249 1s8f:B (1.77) BS01 GDP ? GO:0003924 ... P24408 15196914
    48250 1s8j:A (2.3) BS01 NO3 ? GO:0005216 ... P02945 15109251
    48251 1s8j:A (2.3) BS02 RET ? GO:0005216 ... P02945 15109251
    48252 1s8l:A (2.3) BS01 RET ? GO:0005216 ... P02945 15109251
    48253 1s8n:A (1.482) BS01 AZI ? GO:0000160 ... P9WGM3 15341725
    48254 1s95:A (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    48255 1s95:A (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    48256 1s95:B (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    48257 1s95:B (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    48258 1s97:A (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48259 1s97:A (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48260 1s97:A (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48261 1s97:A (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48262 1s97:B (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48263 1s97:B (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48264 1s97:B (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48265 1s97:B (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48266 1s97:C (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48267 1s97:C (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48268 1s97:C (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48269 1s97:C (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48270 1s97:D (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48271 1s97:D (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48272 1s97:D (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48273 1s97:D (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48274 1s99:A (1.65) BS01 CA ? GO:0030975 ... O34911 15451668
    48275 1s9a:A (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    48276 1s9a:B (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    48277 1s9d:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P84080 14654833
    48278 1s9d:A (1.8) BS02 AFB 3.6.5.2 GO:0000139 ... P84080 14654833
    48279 1s9d:E (1.8) BS01 AFB ? GO:0005085 ... Q99418 14654833
    48280 1s9e:A (2.6) BS01 ADB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    48281 1s9f:A (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48282 1s9f:A (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48283 1s9f:A (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48284 1s9f:A (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48285 1s9f:A (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48286 1s9f:B (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48287 1s9f:B (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48288 1s9f:B (2.0) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48289 1s9f:B (2.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48290 1s9f:B (2.0) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48291 1s9f:B (2.0) BS06 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48292 1s9f:C (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48293 1s9f:C (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48294 1s9f:C (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48295 1s9f:C (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48296 1s9f:C (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48297 1s9f:D (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48298 1s9f:D (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48299 1s9f:D (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48300 1s9f:D (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48301 1s9f:D (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    48302 1s9g:A (2.8) BS01 ABZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    48303 1s9i:A (3.2) BS01 MG 2.7.12.2 GO:0004672 ... P36507 15543157
    48304 1s9i:A (3.2) BS02 ATP 2.7.12.2 GO:0004672 ... P36507 15543157
    48305 1s9i:A (3.2) BS03 5EA 2.7.12.2 GO:0004672 ... P36507 15543157
    48306 1s9i:B (3.2) BS01 MG 2.7.12.2 GO:0004672 ... P36507 15543157
    48307 1s9i:B (3.2) BS02 ATP 2.7.12.2 GO:0004672 ... P36507 15543157
    48308 1s9i:B (3.2) BS03 5EA 2.7.12.2 GO:0004672 ... P36507 15543157
    48309 1s9j:A (2.4) BS01 MG 2.7.12.2 GO:0004672 ... Q02750 15543157
    48310 1s9j:A (2.4) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 15543157
    48311 1s9j:A (2.4) BS03 BBM 2.7.12.2 GO:0004672 ... Q02750 15543157
    48312 1s9k:C (3.1) BS01 dna ? GO:0003677 ... Q13469 N/A
    48313 1s9k:C (3.1) BS02 dna ? GO:0003677 ... Q13469 N/A
    48314 1s9k:D (3.1) BS01 dna ? GO:0003677 ... P01100 N/A
    48315 1s9k:D (3.1) BS02 dna ? GO:0003677 ... P01100 N/A
    48316 1s9k:E (3.1) BS01 dna ? GO:0003677 ... P05412 N/A
    48317 1s9k:E (3.1) BS02 dna ? GO:0003677 ... P05412 N/A
    48318 1s9p:A (2.13) BS01 DES ? N/A P62509 15161930
    48319 1s9p:B (2.13) BS01 DES ? N/A P62509 15161930
    48320 1s9p:C (2.13) BS01 DES ? N/A P62509 15161930
    48321 1s9p:D (2.13) BS01 DES ? N/A P62509 15161930
    48322 1s9q:A (2.2) BS01 OHT ? N/A P62509 15161930
    48323 1s9q:B (2.2) BS01 OHT ? N/A P62509 15161930
    48324 1s9r:A (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    48325 1s9r:B (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    48326 1s9t:A (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    BindingDB: Ki=134nM
    48327 1s9t:B (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    BindingDB: Ki=134nM
    48328 1s9v:A (2.22) BS01 peptide ? GO:0006955 ... P01909 15020763
    48329 1s9v:B (2.22) BS01 peptide ? GO:0006955 ... P01920 15020763
    48330 1s9v:D (2.22) BS01 peptide ? GO:0006955 ... P01909 15020763
    48331 1s9v:E (2.22) BS01 peptide ? GO:0006955 ... P01920 15020763
    48332 1s9w:A (2.2) BS01 peptide ? N/A P04439 15004033
    48333 1s9x:A (2.5) BS01 peptide ? N/A P04439 15004033
    48334 1s9y:A (2.3) BS01 peptide ? N/A P04439 15004033
    48335 1sa0:A (3.58) BS01 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48336 1sa0:A (3.58) BS02 CN2 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48337 1sa0:B (3.58) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    48338 1sa0:B (3.58) BS02 CN2 ? GO:0000226 ... Q6B856 15014504
    48339 1sa0:C (3.58) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48340 1sa0:C (3.58) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48341 1sa0:C (3.58) BS03 CN2 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48342 1sa0:D (3.58) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    48343 1sa0:D (3.58) BS02 CN2 ? GO:0000226 ... Q6B856 15014504
    48344 1sa1:A (4.2) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48345 1sa1:A (4.2) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48346 1sa1:B (4.2) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    48347 1sa1:B (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    48348 1sa1:C (4.2) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48349 1sa1:C (4.2) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    48350 1sa1:D (4.2) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    48351 1sa1:D (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    48352 1sa3:A (1.95) BS01 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    48353 1sa3:A (1.95) BS02 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    48354 1sa3:B (1.95) BS01 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    48355 1sa3:B (1.95) BS02 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    48356 1sa4:A (2.1) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15170324
    48357 1sa4:A (2.1) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15170324 BindingDB: Kd=2.0nM
    48358 1sa4:B (2.1) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 15170324
    48359 1sa4:B (2.1) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15170324
    48360 1sa4:B (2.1) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 15170324
    48361 1sa4:B (2.1) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 15170324
    48362 1sa4:B (2.1) BS05 JAN 2.5.1.58 GO:0003824 ... P49356 15170324 BindingDB: IC50=0.860nM
    48363 1sa5:A (2.6) BS01 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 15170324
    48364 1sa5:B (2.6) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 15170324
    48365 1sa5:B (2.6) BS02 FPP 2.5.1.58 GO:0003824 ... Q02293 15170324
    48366 1sa5:B (2.6) BS03 BMV 2.5.1.58 GO:0003824 ... Q02293 15170324
    48367 1sac:A (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    48368 1sac:A (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    48369 1sac:B (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    48370 1sac:B (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    48371 1sac:C (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    48372 1sac:C (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    48373 1sac:D (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    48374 1sac:D (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    48375 1sac:E (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    48376 1sac:E (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    48377 1sat:A (1.75) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 8089845
    48378 1sat:A (1.75) BS02 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48379 1sat:A (1.75) BS03 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48380 1sat:A (1.75) BS04 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48381 1sat:A (1.75) BS05 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48382 1sat:A (1.75) BS06 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48383 1sat:A (1.75) BS07 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48384 1sat:A (1.75) BS08 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    48385 1sav:A (2.5) BS01 CA ? GO:0001786 ... P08758 1311770
    48386 1sav:A (2.5) BS02 CA ? GO:0001786 ... P08758 1311770
    48387 1sav:A (2.5) BS03 CA ? GO:0001786 ... P08758 1311770
    48388 1sav:A (2.5) BS04 CA ? GO:0001786 ... P08758 1311770
    48389 1saw:A (2.2) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    48390 1saw:A (2.2) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    48391 1saw:B (2.2) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    48392 1saw:B (2.2) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    48393 1sax:A (2.8) BS01 dna ? GO:0003677 ... P68261 14960592
    48394 1sax:A (2.8) BS02 dna ? GO:0003677 ... P68261 14960592
    48395 1sax:B (2.8) BS01 dna ? GO:0003677 ... P68261 14960592
    48396 1sax:B (2.8) BS02 dna ? GO:0003677 ... P68261 14960592
    48397 1say:A (2.1) BS01 PYR 1.4.1.1 GO:0000166 ... O52942 9665169
    48398 1saz:A (2.5) BS01 ACP 2.7.2.7 GO:0005524 ... Q9X278 19201797
    48399 1sb0:A (-1.00) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 15019774
    48400 1sb1:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15051174

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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