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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47401 1rzg:C (2.0) BS01 GLC N/A N/A N/A 14981267
    47402 1rzg:C (2.0) BS02 FRU N/A N/A N/A 14981267
    47403 1rzg:C (2.0) BS03 GLC N/A N/A N/A 14981267
    47404 1rzg:D (2.0) BS01 FRU N/A N/A N/A 14981267
    47405 1rzh:L (1.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    47406 1rzh:L (1.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    47407 1rzh:L (1.8) BS03 BPH ? GO:0009772 ... P0C0Y8 15062092
    47408 1rzh:L (1.8) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    47409 1rzh:L (1.8) BS05 FE2 ? GO:0009772 ... P0C0Y8 15062092
    47410 1rzh:L (1.8) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    47411 1rzh:L (1.8) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    47412 1rzh:L (1.8) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    47413 1rzh:M (1.8) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    47414 1rzh:M (1.8) BS02 BPH ? GO:0009772 ... P0C0Y9 15062092
    47415 1rzh:M (1.8) BS03 FE2 ? GO:0009772 ... P0C0Y9 15062092
    47416 1rzh:M (1.8) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    47417 1rzh:M (1.8) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    47418 1rzh:M (1.8) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    47419 1rzh:M (1.8) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    47420 1rzh:M (1.8) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    47421 1rzl:A (1.6) BS01 SO4 ? GO:0006869 ... Q0IQK9 9512714
    47422 1rzm:A (2.2) BS01 PEP 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    47423 1rzm:A (2.2) BS02 E4P 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    47424 1rzm:B (2.2) BS01 PEP 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    47425 1rzm:B (2.2) BS02 E4P 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    47426 1rzo:A (2.63) BS01 GAL 3.2.2.22 GO:0017148 ... P06750 N/A
    47427 1rzo:B (2.63) BS01 GAL 3.2.2.22 N/A P06750 N/A
    47428 1rzo:B (2.63) BS02 GAL 3.2.2.22 N/A P06750 N/A
    47429 1rzo:C (2.63) BS01 GAL 3.2.2.22 GO:0017148 ... P06750 N/A
    47430 1rzo:D (2.63) BS01 GAL 3.2.2.22 N/A P06750 N/A
    47431 1rzo:D (2.63) BS02 GAL 3.2.2.22 N/A P06750 N/A
    47432 1rzp:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47433 1rzp:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47434 1rzp:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47435 1rzp:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47436 1rzp:C (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47437 1rzp:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47438 1rzq:A (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47439 1rzq:A (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47440 1rzq:B (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47441 1rzq:B (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47442 1rzq:C (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47443 1rzq:C (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    47444 1rzr:A (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    47445 1rzr:A (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    47446 1rzr:A (2.8) BS03 MG ? GO:0000976 ... P46828 15369672
    47447 1rzr:C (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    47448 1rzr:C (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    47449 1rzr:D (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    47450 1rzr:D (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    47451 1rzr:D (2.8) BS03 MG ? GO:0000976 ... P46828 15369672
    47452 1rzr:G (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    47453 1rzr:G (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    47454 1rzt:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47455 1rzt:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47456 1rzt:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47457 1rzt:A (2.1) BS04 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47458 1rzt:E (2.1) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47459 1rzt:E (2.1) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47460 1rzt:E (2.1) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47461 1rzt:I (2.1) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47462 1rzt:I (2.1) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47463 1rzt:I (2.1) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47464 1rzt:M (2.1) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47465 1rzt:M (2.1) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47466 1rzt:M (2.1) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47467 1rzt:M (2.1) BS04 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 14992725
    47468 1rzu:A (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    47469 1rzu:B (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    47470 1rzx:A (2.1) BS01 peptide ? N/A O97111 15023337
    47471 1rzy:A (1.8) BS01 5AS 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P80912 14982931 MOAD: Ki=1.25uM
    47472 1rzz:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    47473 1rzz:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    47474 1rzz:L (2.4) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    47475 1rzz:L (2.4) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    47476 1rzz:L (2.4) BS05 FE2 ? GO:0009772 ... P0C0Y8 15062092
    47477 1rzz:L (2.4) BS06 BPH ? GO:0009772 ... P0C0Y8 15062092
    47478 1rzz:L (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    47479 1rzz:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    47480 1rzz:M (2.4) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    47481 1rzz:M (2.4) BS03 U10 ? GO:0009772 ... P0C0Y9 15062092
    47482 1rzz:M (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    47483 1rzz:M (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    47484 1rzz:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    47485 1rzz:M (2.4) BS07 BPH ? GO:0009772 ... P0C0Y9 15062092
    47486 1rzz:M (2.4) BS08 U10 ? GO:0009772 ... P0C0Y9 15062092
    47487 1rzz:M (2.4) BS09 SPO ? GO:0009772 ... P0C0Y9 15062092
    47488 1rzz:R (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    47489 1rzz:R (2.4) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    47490 1rzz:R (2.4) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    47491 1rzz:R (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y8 15062092
    47492 1rzz:R (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    47493 1rzz:R (2.4) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    47494 1rzz:R (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    47495 1rzz:S (2.4) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    47496 1rzz:S (2.4) BS02 FE2 ? GO:0009772 ... P0C0Y9 15062092
    47497 1rzz:S (2.4) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    47498 1rzz:S (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    47499 1rzz:S (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    47500 1rzz:S (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    47501 1rzz:S (2.4) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    47502 1rzz:S (2.4) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    47503 1s00:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    47504 1s00:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    47505 1s00:L (2.6) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    47506 1s00:L (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 15062092
    47507 1s00:L (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 15062092
    47508 1s00:L (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 15062092
    47509 1s00:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    47510 1s00:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    47511 1s00:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    47512 1s00:M (2.6) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    47513 1s00:M (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 15062092
    47514 1s00:M (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    47515 1s00:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    47516 1s00:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    47517 1s00:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    47518 1s00:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    47519 1s00:R (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    47520 1s00:R (2.6) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    47521 1s00:R (2.6) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    47522 1s00:R (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y8 15062092
    47523 1s00:R (2.6) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    47524 1s00:R (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    47525 1s00:R (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    47526 1s00:S (2.6) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    47527 1s00:S (2.6) BS02 FE2 ? GO:0009772 ... P0C0Y9 15062092
    47528 1s00:S (2.6) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    47529 1s00:S (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    47530 1s00:S (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    47531 1s00:S (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    47532 1s00:S (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    47533 1s00:S (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    47534 1s01:A (1.7) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    47535 1s02:A (1.9) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    47536 1s02:A (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    47537 1s03:G (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    47538 1s03:H (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    47539 1s05:A (-1.00) BS01 HEC ? GO:0005506 ... P00150 14735333
    47540 1s07:A (2.42) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 14756557
    47541 1s07:B (2.42) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 14756557
    47542 1s0b:A (2.0) BS01 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47543 1s0b:A (2.0) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47544 1s0c:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    47545 1s0c:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47546 1s0c:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47547 1s0d:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    47548 1s0d:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47549 1s0d:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47550 1s0e:A (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    47551 1s0e:A (1.9) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47552 1s0e:A (1.9) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47553 1s0f:A (2.3) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    47554 1s0f:A (2.3) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47555 1s0f:A (2.3) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    47556 1s0h:A (3.0) BS01 HEM ? GO:0004601 ... P01959 16488065
    47557 1s0h:B (3.0) BS01 HEM ? GO:0004601 ... D1MPT0 16488065
    47558 1s0i:A (1.6) BS01 GLC 3.2.1.18 GO:0004308 ... Q26966 15130470
    47559 1s0i:A (1.6) BS02 SIA 3.2.1.18 GO:0004308 ... Q26966 15130470
    47560 1s0j:A (1.65) BS01 MUS 3.2.1.18 GO:0004308 ... Q26966 15130470
    47561 1s0m:A (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47562 1s0m:A (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47563 1s0m:A (2.7) BS03 MG 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47564 1s0m:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47565 1s0m:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47566 1s0m:A (2.7) BS06 DTP 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47567 1s0m:B (2.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47568 1s0m:B (2.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47569 1s0m:B (2.7) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47570 1s0m:B (2.7) BS04 dna 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47571 1s0m:B (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47572 1s0m:B (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47573 1s0m:B (2.7) BS07 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47574 1s0m:B (2.7) BS08 DTP 2.7.7.7 GO:0000287 ... Q97W02 14982998
    47575 1s0n:A (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47576 1s0n:A (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47577 1s0n:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47578 1s0n:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47579 1s0n:A (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47580 1s0n:A (2.8) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47581 1s0o:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47582 1s0o:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47583 1s0o:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47584 1s0o:A (2.1) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47585 1s0o:A (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47586 1s0o:A (2.1) BS06 TTP 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47587 1s0o:B (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47588 1s0o:B (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47589 1s0o:B (2.1) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47590 1s0o:B (2.1) BS04 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47591 1s0o:B (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47592 1s0o:B (2.1) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47593 1s0o:B (2.1) BS07 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47594 1s0o:B (2.1) BS08 TTP 2.7.7.7 GO:0000287 ... Q97W02 15023344
    47595 1s0q:A (1.02) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    47596 1s0r:A (1.02) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    47597 1s0u:A (2.4) BS01 ZN 3.6.5.3 GO:0000049 ... Q58657 14688270
    47598 1s0v:A (3.2) BS01 dna 2.7.7.6 GO:0003677 ... P00573 15016373
    47599 1s0v:A (3.2) BS02 rna 2.7.7.6 GO:0003677 ... P00573 15016373
    47600 1s0v:A (3.2) BS03 dna 2.7.7.6 GO:0003677 ... P00573 15016373
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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