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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47001 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    47002 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    47003 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    47004 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    47005 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    47006 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    47007 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    47008 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    47009 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    47010 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    47011 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    47012 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    47013 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    47014 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    47015 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    47016 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    47017 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    47018 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    47019 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    47020 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    47021 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    47022 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    47023 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    47024 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    47025 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    47026 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    47027 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    47028 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    47029 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    47030 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    47031 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    47032 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    47033 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    47034 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    47035 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    47036 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    47037 1rwt:J (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    47038 1rwt:J (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    47039 1rwt:J (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    47040 1rwt:J (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    47041 1rwt:J (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    47042 1rwt:J (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    47043 1rwt:J (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    47044 1rwt:J (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    47045 1rwt:J (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    47046 1rwt:J (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    47047 1rwt:J (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    47048 1rwt:J (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    47049 1rwt:J (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    47050 1rwt:J (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    47051 1rwv:A (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    47052 1rwv:B (2.1) BS01 5PH 3.4.22.36 GO:0004197 ... P29466 N/A
    47053 1rww:A (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    47054 1rww:B (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    47055 1rwx:A (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    47056 1rwx:B (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    47057 1rwy:A (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    47058 1rwy:A (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    47059 1rwy:B (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    47060 1rwy:B (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    47061 1rwy:C (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    47062 1rwy:C (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    47063 1rx0:A (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47064 1rx0:A (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47065 1rx0:B (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47066 1rx0:B (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47067 1rx0:C (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47068 1rx0:C (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47069 1rx0:C (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47070 1rx0:D (1.77) BS01 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47071 1rx0:D (1.77) BS02 FAD 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47072 1rx0:D (1.77) BS03 2MC 1.3.8.5 GO:0003995 ... Q9UKU7 14752098
    47073 1rx1:A (2.0) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    47074 1rx2:A (1.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47075 1rx3:A (2.2) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    47076 1rx3:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47077 1rx4:A (2.2) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47078 1rx4:A (2.2) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47079 1rx5:A (2.3) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47080 1rx6:A (2.0) BS01 DDF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47081 1rx6:A (2.0) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47082 1rx8:A (2.8) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47083 1rx9:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    47084 1rxc:A (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47085 1rxc:A (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47086 1rxc:B (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47087 1rxc:B (2.35) BS02 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47088 1rxc:B (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47089 1rxc:C (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47090 1rxc:C (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47091 1rxc:C (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47092 1rxc:C (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47093 1rxc:D (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47094 1rxc:D (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47095 1rxc:D (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47096 1rxc:D (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47097 1rxc:E (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47098 1rxc:E (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47099 1rxc:E (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47100 1rxc:E (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47101 1rxc:F (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47102 1rxc:F (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47103 1rxc:F (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47104 1rxc:F (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47105 1rxc:I (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47106 1rxc:I (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47107 1rxc:I (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47108 1rxc:J (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47109 1rxc:J (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47110 1rxc:J (2.35) BS03 PO4 2.4.2.3 GO:0003824 ... P12758 15003451
    47111 1rxc:J (2.35) BS04 5UD 2.4.2.3 GO:0003824 ... P12758 15003451
    47112 1rxc:K (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47113 1rxc:K (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47114 1rxc:K (2.35) BS03 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47115 1rxc:K (2.35) BS04 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47116 1rxc:L (2.35) BS01 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47117 1rxc:L (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47118 1rxc:L (2.35) BS03 R1P 2.4.2.3 GO:0003824 ... P12758 15003451
    47119 1rxc:L (2.35) BS04 URF 2.4.2.3 GO:0003824 ... P12758 15003451
    47120 1rxe:A (1.7) BS01 MNB 1.20.4.4 GO:0004725 ... P0A006 15159594
    47121 1rxf:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    47122 1rxg:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    47123 1rxg:A (1.5) BS02 AKG 1.14.20.1 GO:0005506 ... P18548 9723623
    47124 1rxh:A (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    47125 1rxh:B (2.9) BS01 BNI ? GO:0009374 ... P22629 15079055
    47126 1rxj:A (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    47127 1rxj:B (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    47128 1rxj:B (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    47129 1rxj:C (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    47130 1rxj:C (1.14) BS02 BNI ? GO:0009374 ... P22629 15079055
    47131 1rxj:D (1.14) BS01 BNI ? GO:0009374 ... P22629 15079055
    47132 1rxk:A (1.7) BS01 BNI ? GO:0009374 ... P22629 15079055
    47133 1rxk:B (1.7) BS01 BNI ? GO:0009374 ... P22629 15079055
    47134 1rxm:A (2.8) BS01 peptide ? GO:0003677 ... O29912 14718165
    47135 1rxo:B (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    47136 1rxo:B (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    47137 1rxo:E (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    47138 1rxo:E (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    47139 1rxo:H (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    47140 1rxo:H (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    47141 1rxo:L (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    47142 1rxo:L (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    47143 1rxp:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 15081015
    47144 1rxp:A (1.7) BS02 169 3.4.21.4 GO:0004175 ... P00760 15081015 PDBbind: -logKd/Ki=7.14, IC50=72nM
    47145 1rxq:D (1.7) BS01 GLU 3.-.-.- GO:0005737 ... O31562 15581359
    47146 1rxq:D (1.7) BS02 SER 3.-.-.- GO:0005737 ... O31562 15581359
    47147 1rxr:A (-1.00) BS01 ZN ? GO:0003700 ... P19793 9698548
    47148 1rxr:A (-1.00) BS02 ZN ? GO:0003700 ... P19793 9698548
    47149 1rxs:A (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47150 1rxs:B (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47151 1rxs:B (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47152 1rxs:B (2.8) BS03 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47153 1rxs:C (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47154 1rxs:C (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47155 1rxs:C (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47156 1rxs:D (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47157 1rxs:D (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47158 1rxs:E (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47159 1rxs:E (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47160 1rxs:F (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47161 1rxs:F (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47162 1rxs:G (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47163 1rxs:G (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47164 1rxs:H (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47165 1rxs:H (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47166 1rxs:H (2.8) BS03 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47167 1rxs:I (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47168 1rxs:I (2.8) BS02 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47169 1rxs:I (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47170 1rxs:J (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47171 1rxs:J (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47172 1rxs:K (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47173 1rxs:K (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47174 1rxs:K (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47175 1rxs:L (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47176 1rxs:M (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47177 1rxs:M (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47178 1rxs:N (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47179 1rxs:N (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47180 1rxs:O (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47181 1rxs:O (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47182 1rxs:O (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47183 1rxs:P (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47184 1rxs:P (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47185 1rxs:Q (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47186 1rxs:Q (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47187 1rxs:R (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47188 1rxs:R (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47189 1rxs:a (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47190 1rxs:a (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47191 1rxs:b (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47192 1rxs:b (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47193 1rxs:c (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47194 1rxs:c (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47195 1rxs:d (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47196 1rxs:d (2.8) BS02 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    47197 1rxs:e (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47198 1rxs:e (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47199 1rxs:h (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    47200 1rxs:h (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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