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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46801 1rvv:D (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46802 1rvv:D (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46803 1rvv:E (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46804 1rvv:E (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46805 1rvv:F (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46806 1rvv:F (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46807 1rvv:G (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46808 1rvv:G (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46809 1rvv:H (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46810 1rvv:I (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46811 1rvv:J (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46812 1rvv:K (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46813 1rvv:K (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46814 1rvv:L (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46815 1rvv:M (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46816 1rvv:M (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46817 1rvv:N (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46818 1rvv:O (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46819 1rvv:O (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46820 1rvv:P (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46821 1rvv:Q (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46822 1rvv:R (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46823 1rvv:S (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46824 1rvv:S (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46825 1rvv:T (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46826 1rvv:U (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46827 1rvv:V (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46828 1rvv:V (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46829 1rvv:W (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46830 1rvv:X (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46831 1rvv:Y (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46832 1rvv:Z (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    46833 1rvw:A (2.5) BS01 HEM ? GO:0004601 ... P69905 9649306
    46834 1rvw:B (2.5) BS01 HEM ? GO:0004601 ... P68871 9649306
    46835 1rvx:A (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46836 1rvx:C (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46837 1rvx:E (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46838 1rvx:G (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46839 1rvx:I (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46840 1rvx:K (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    46841 1rvy:A (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    46842 1rvy:B (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    46843 1rvy:B (2.9) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    46844 1rvz:A (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46845 1rvz:A (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46846 1rvz:C (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46847 1rvz:C (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46848 1rvz:E (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46849 1rvz:E (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46850 1rvz:G (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46851 1rvz:G (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46852 1rvz:I (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46853 1rvz:I (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46854 1rvz:K (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    46855 1rvz:K (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    46856 1rw4:A (2.5) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 14967020
    46857 1rw8:A (2.4) BS01 580 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=0.175uM
    PDBbind: -logKd/Ki=6.76, IC50=0.175uM
    BindingDB: IC50=1320nM
    46858 1rwb:A (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    46859 1rwb:B (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    46860 1rwb:E (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    46861 1rwb:F (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    46862 1rwc:A (1.9) BS01 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    46863 1rwe:B (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    46864 1rwe:D (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    46865 1rwf:A (1.45) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46866 1rwf:A (1.45) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    46867 1rwf:A (1.45) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46868 1rwf:A (1.45) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    46869 1rwg:A (1.5) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46870 1rwg:A (1.5) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    46871 1rwg:A (1.5) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46872 1rwg:A (1.5) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    46873 1rwh:A (1.25) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46874 1rwh:A (1.25) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    46875 1rwh:A (1.25) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    46876 1rwh:A (1.25) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    46877 1rwj:A (1.7) BS01 HEC ? N/A Q74BP5 15133162
    46878 1rwj:A (1.7) BS02 HEC ? N/A Q74BP5 15133162
    46879 1rwj:A (1.7) BS03 HEC ? N/A Q74BP5 15133162
    46880 1rwk:A (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    46881 1rwk:B (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    46882 1rwm:A (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    46883 1rwm:B (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    46884 1rwn:A (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    46885 1rwn:B (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    46886 1rwo:A (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    46887 1rwo:B (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    46888 1rwp:A (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    46889 1rwp:B (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    46890 1rwq:A (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.1nM
    46891 1rwq:B (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.1nM
    46892 1rwt:A (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46893 1rwt:A (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46894 1rwt:A (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46895 1rwt:A (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46896 1rwt:A (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46897 1rwt:A (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46898 1rwt:A (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46899 1rwt:A (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46900 1rwt:A (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46901 1rwt:A (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46902 1rwt:A (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46903 1rwt:A (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46904 1rwt:A (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46905 1rwt:A (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46906 1rwt:B (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46907 1rwt:B (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46908 1rwt:B (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46909 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46910 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46911 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46912 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46913 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46914 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46915 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46916 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46917 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46918 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46919 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46920 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46921 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46922 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    46923 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46924 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46925 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46926 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46927 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46928 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46929 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46930 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46931 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46932 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46933 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46934 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46935 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46936 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46937 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46938 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46939 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46940 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46941 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46942 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46943 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46944 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46945 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46946 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46947 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46948 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46949 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46950 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46951 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46952 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46953 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46954 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46955 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46956 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    46957 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    46958 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46959 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    46960 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    46961 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46962 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46963 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46964 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    46965 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    46966 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46967 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46968 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46969 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    46970 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    46971 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46972 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46973 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46974 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46975 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46976 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46977 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46978 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46979 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46980 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46981 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46982 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46983 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    46984 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    46985 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    46986 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    46987 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    46988 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    46989 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    46990 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    46991 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    46992 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    46993 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    46994 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    46995 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    46996 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    46997 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    46998 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    46999 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    47000 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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