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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45601 1re3:F (2.45) BS01 peptide ? GO:0005102 ... P02679 14992584
    45602 1re3:F (2.45) BS02 CA ? GO:0005102 ... P02679 14992584
    45603 1re4:B (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    45604 1re4:B (2.7) BS02 CA ? GO:0005102 ... P02675 14992584
    45605 1re4:C (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    45606 1re4:C (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    45607 1re4:E (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    45608 1re4:F (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    45609 1re4:F (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    45610 1re8:A (2.1) BS01 BD2 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=0.3nM
    PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    45611 1re9:A (1.45) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    45612 1re9:A (1.45) BS02 DSO 1.14.15.1 GO:0004497 ... P00183 15522298 MOAD: Kd~0.02uM
    45613 1rea:A (2.7) BS01 ADP ? GO:0000725 ... P0A7G6 1731253
    45614 1rec:A (1.9) BS01 CA ? GO:0001750 ... P21457 8242744
    45615 1red:B (1.6) BS01 C5X 3.2.1.8 GO:0004553 ... P36217 8755744
    45616 1ree:B (1.6) BS01 07E 3.2.1.8 GO:0004553 ... P36217 8755744
    45617 1ref:B (1.8) BS01 C3X 3.2.1.8 GO:0004553 ... P36217 8755744
    45618 1rej:A (2.2) BS01 B1L 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    45619 1rek:A (2.3) BS01 B8L 2.7.11.11 GO:0000122 ... P05132 14705934 MOAD: Ki=200nM
    PDBbind: -logKd/Ki=6.70, Ki=200nM
    45620 1rek:A (2.3) BS02 PTL 2.7.11.11 GO:0000122 ... P05132 14705934
    45621 1rem:A (2.1) BS01 BMA 3.2.1.17 GO:0003796 ... P61626 9757098
    45622 1reo:A (2.31) BS01 FAD 1.4.3.2 GO:0001716 ... Q6STF1 15103157
    45623 1rep:C (2.6) BS01 dna ? GO:0003677 ... P03856 10469640
    45624 1rep:C (2.6) BS02 dna ? GO:0003677 ... P03856 10469640
    45625 1rep:C (2.6) BS03 MG ? GO:0003677 ... P03856 10469640
    45626 1req:A (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    45627 1req:A (2.0) BS02 DCA 5.4.99.2 GO:0003824 ... P11653 8805541
    45628 1req:C (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    45629 1req:C (2.0) BS02 DCA 5.4.99.2 GO:0003824 ... P11653 8805541
    45630 1req:D (2.0) BS01 DCA 5.4.99.2 GO:0003824 ... P11652 8805541
    45631 1rev:A (2.6) BS01 TB9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 8535785 PDBbind: -logKd/Ki=7.48, Ki=33nM
    45632 1rez:A (1.7) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 8885835
    45633 1rf0:B (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    45634 1rf0:B (2.81) BS02 CA ? GO:0005102 ... P02675 14992585
    45635 1rf0:C (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    45636 1rf0:E (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    45637 1rf0:E (2.81) BS02 CA ? GO:0005102 ... P02675 14992585
    45638 1rf0:F (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    45639 1rf1:B (2.53) BS01 peptide ? GO:0005102 ... P02675 14992585
    45640 1rf1:B (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    45641 1rf1:C (2.53) BS01 peptide ? GO:0005102 ... P02679 14992585
    45642 1rf1:C (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    45643 1rf1:E (2.53) BS01 peptide ? GO:0005102 ... P02675 14992585
    45644 1rf1:E (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    45645 1rf1:F (2.53) BS01 peptide ? GO:0005102 ... P02679 14992585
    45646 1rf1:F (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    45647 1rf2:D (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    45648 1rf2:E (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    45649 1rf2:F (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    45650 1rf2:G (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    45651 1rf2:H (1.35) BS01 BV4 ? GO:0005515 ... P01556 15380181 MOAD: ic50=17uM
    45652 1rf3:A (3.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 14517219
    45653 1rf4:A (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45654 1rf4:B (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45655 1rf4:C (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45656 1rf4:D (2.2) BS01 SPQ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45657 1rf6:A (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45658 1rf6:A (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45659 1rf6:B (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45660 1rf6:B (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45661 1rf6:C (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45662 1rf6:C (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45663 1rf6:D (1.9) BS01 GPJ 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45664 1rf6:D (1.9) BS02 S3P 2.5.1.19 GO:0003824 ... Q9S400 14763973
    45665 1rf7:A (1.8) BS01 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45666 1rf7:A (1.8) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45667 1rf8:A (-1.00) BS01 MTN ? GO:0000184 ... P07260 14675538
    45668 1rf8:A (-1.00) BS02 MTN ? GO:0000184 ... P07260 14675538
    45669 1rf8:A (-1.00) BS03 M7G ? GO:0000184 ... P07260 14675538
    45670 1rf9:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15522298
    45671 1rf9:A (1.8) BS02 DBR 1.14.15.1 GO:0004497 ... P00183 15522298
    45672 1rff:A (1.7) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45673 1rff:A (1.7) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45674 1rff:A (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45675 1rff:B (1.7) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45676 1rff:B (1.7) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45677 1rff:B (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45678 1rfg:E (2.9) BS01 GMP 2.4.2.1 GO:0000255 ... P00491 15983407
    45679 1rfh:A (-1.00) BS01 ZN ? N/A Q5EBH1 N/A
    45680 1rfh:A (-1.00) BS02 ZN ? N/A Q5EBH1 N/A
    45681 1rfi:A (2.2) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45682 1rfi:A (2.2) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45683 1rfi:A (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45684 1rfi:B (2.2) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45685 1rfi:B (2.2) BS02 peptide 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45686 1rfi:B (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45687 1rfj:A (2.0) BS01 CA ? GO:0005509 ... Q7DMN9 15213382
    45688 1rfj:A (2.0) BS02 CA ? GO:0005509 ... Q7DMN9 15213382
    45689 1rfj:A (2.0) BS03 CA ? GO:0005509 ... Q7DMN9 15213382
    45690 1rfj:A (2.0) BS04 CA ? GO:0005509 ... Q7DMN9 15213382
    45691 1rfk:A (1.25) BS01 FES ? GO:0009055 ... P00248 15961101
    45692 1rfk:B (1.25) BS01 FES ? GO:0009055 ... P00248 15961101
    45693 1rfn:A (2.8) BS01 CA 3.4.21.22 GO:0004252 ... P00740 10467148
    45694 1rfn:A (2.8) BS02 PBZ 3.4.21.22 GO:0004252 ... P00740 10467148
    45695 1rfq:A (3.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15099571
    45696 1rfq:A (3.0) BS02 LAR 3.6.4.- GO:0000287 ... P68135 15099571
    45697 1rfq:B (3.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 15099571
    45698 1rfq:B (3.0) BS02 ATP 3.6.4.- GO:0000287 ... P68135 15099571
    45699 1rfq:B (3.0) BS03 LAR 3.6.4.- GO:0000287 ... P68135 15099571
    45700 1rfs:A (1.83) BS01 FES 7.1.1.6 GO:0016020 ... P08980 9438861
    45701 1rft:A (2.8) BS01 ACP 2.7.1.35 GO:0005524 ... P82197 14722069
    45702 1rft:A (2.8) BS02 PXM 2.7.1.35 GO:0005524 ... P82197 14722069
    45703 1rfu:A (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45704 1rfu:A (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45705 1rfu:B (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45706 1rfu:B (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45707 1rfu:C (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45708 1rfu:C (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45709 1rfu:D (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45710 1rfu:D (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45711 1rfu:E (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45712 1rfu:E (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45713 1rfu:F (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45714 1rfu:F (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45715 1rfu:G (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45716 1rfu:G (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45717 1rfu:H (2.8) BS01 PLP 2.7.1.35 GO:0005524 ... P82197 14722069
    45718 1rfu:H (2.8) BS02 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45719 1rfv:A (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45720 1rfv:B (2.8) BS01 ADP 2.7.1.35 GO:0005524 ... P82197 14722069
    45721 1rg1:A (2.1) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45722 1rg1:A (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45723 1rg1:A (2.1) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45724 1rg1:B (2.1) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45725 1rg1:B (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45726 1rg1:B (2.1) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45727 1rg2:A (2.1) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45728 1rg2:A (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45729 1rg2:A (2.1) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45730 1rg2:A (2.1) BS04 OTR 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45731 1rg2:B (2.1) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45732 1rg2:B (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    45733 1rg2:B (2.1) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45734 1rg2:B (2.1) BS04 OTR 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    45735 1rg5:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 15130469
    45736 1rg5:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 15130469
    45737 1rg5:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 15130469
    45738 1rg5:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 15130469
    45739 1rg5:L (2.5) BS05 FE ? GO:0009772 ... P0C0Y8 15130469
    45740 1rg5:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 15130469
    45741 1rg5:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 15130469
    45742 1rg5:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 15130469
    45743 1rg5:M (2.5) BS03 FE ? GO:0009772 ... P0C0Y9 15130469
    45744 1rg5:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 15130469
    45745 1rg5:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 15130469
    45746 1rg5:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 15130469
    45747 1rg5:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 15130469
    45748 1rg7:A (2.0) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=0.7nM
    BindingDB: IC50=8.8nM, EC50=1nM
    45749 1rg9:A (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45750 1rg9:A (2.5) BS02 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45751 1rg9:A (2.5) BS03 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45752 1rg9:A (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45753 1rg9:B (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45754 1rg9:B (2.5) BS02 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45755 1rg9:B (2.5) BS03 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45756 1rg9:B (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45757 1rg9:C (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45758 1rg9:C (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45759 1rg9:C (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45760 1rg9:C (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45761 1rg9:D (2.5) BS01 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45762 1rg9:D (2.5) BS02 SAM 2.5.1.6 GO:0000287 ... P0A817 14967023
    45763 1rg9:D (2.5) BS03 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45764 1rg9:D (2.5) BS04 PPK 2.5.1.6 GO:0000287 ... P0A817 14967023
    45765 1rga:A (1.7) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8276784
    45766 1rga:A (1.7) BS02 G 4.6.1.24 GO:0001411 ... P00651 8276784
    45767 1rgb:A (3.3) BS01 ELD 3.1.1.4 GO:0004623 ... P14420 15194511
    45768 1rgb:B (3.3) BS01 ELD 3.1.1.4 GO:0004623 ... P14420 15194511
    45769 1rgb:K (3.3) BS01 ELD 3.1.1.4 GO:0004623 ... P14420 15194511
    45770 1rgb:L (3.3) BS01 ELD 3.1.1.4 GO:0004623 ... P14420 15194511
    45771 1rgc:A (2.0) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8281918
    45772 1rgc:B (2.0) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8281918
    45773 1rgd:A (-1.00) BS01 ZN ? GO:0003700 ... P06536 7723024
    45774 1rge:A (1.15) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299705
    45775 1rgi:A (3.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15215896
    45776 1rgi:G (3.0) BS01 CA ? GO:0051015 ... Q28372 15215896
    45777 1rgi:G (3.0) BS02 CA ? GO:0051015 ... Q28372 15215896
    45778 1rgi:G (3.0) BS03 CA ? GO:0051015 ... Q28372 15215896
    45779 1rgj:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 15178256
    45780 1rgk:A (1.87) BS01 2AM 4.6.1.24 GO:0001411 ... P00651 1350642 MOAD: Kd=49.1uM
    PDBbind: -logKd/Ki=4.31, Kd=49.1uM
    45781 1rgl:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 1350642 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    45782 1rgn:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15130469
    45783 1rgn:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15130469
    45784 1rgn:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 15130469
    45785 1rgn:L (2.8) BS04 U10 ? GO:0009772 ... P0C0Y8 15130469
    45786 1rgn:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 15130469
    45787 1rgn:L (2.8) BS06 BCL ? GO:0009772 ... P0C0Y8 15130469
    45788 1rgn:L (2.8) BS07 BPH ? GO:0009772 ... P0C0Y8 15130469
    45789 1rgn:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 15130469
    45790 1rgn:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 15130469
    45791 1rgn:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 15130469
    45792 1rgn:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 15130469
    45793 1rgn:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 15130469
    45794 1rgn:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 15130469
    45795 1rgn:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 15130469
    45796 1rgn:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 15130469
    45797 1rgn:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 15130469
    45798 1rgo:A (-1.00) BS01 rna ? GO:0003729 ... P47974 14981510
    45799 1rgo:A (-1.00) BS02 ZN ? GO:0003729 ... P47974 14981510
    45800 1rgo:A (-1.00) BS03 ZN ? GO:0003729 ... P47974 14981510

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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