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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45201 1r89:A (1.8) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45202 1r89:A (1.8) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    45203 1r89:A (1.8) BS04 CTP 2.7.7.72 GO:0000049 ... O28126 14636575
    45204 1r89:A (1.8) BS05 CTP 2.7.7.72 GO:0000049 ... O28126 14636575
    45205 1r8a:A (2.1) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45206 1r8a:A (2.1) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45207 1r8b:A (2.0) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45208 1r8b:A (2.0) BS02 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    45209 1r8b:A (2.0) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    45210 1r8b:A (2.0) BS04 ATP 2.7.7.72 GO:0000049 ... O28126 14636575
    45211 1r8b:A (2.0) BS05 ATP 2.7.7.72 GO:0000049 ... O28126 14636575
    45212 1r8c:A (1.9) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45213 1r8c:A (1.9) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45214 1r8c:A (1.9) BS03 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45215 1r8c:A (1.9) BS04 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45216 1r8c:A (1.9) BS05 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    45217 1r8c:A (1.9) BS06 UTP 2.7.7.72 GO:0000049 ... O28126 14636575
    45218 1r8c:A (1.9) BS07 UTP 2.7.7.72 GO:0000049 ... O28126 14636575
    45219 1r8d:A (2.7) BS01 dna ? GO:0003677 ... P71039 14985361 PDBbind: Kd=96nM
    45220 1r8d:A (2.7) BS02 dna ? GO:0003677 ... P71039 14985361 PDBbind: Kd=96nM
    45221 1r8d:B (2.7) BS01 dna ? GO:0003677 ... P71039 14985361 PDBbind: Kd=96nM
    45222 1r8d:B (2.7) BS02 dna ? GO:0003677 ... P71039 14985361 PDBbind: Kd=96nM
    45223 1r8e:A (2.4) BS01 dna ? GO:0003677 ... P39075 14985361 PDBbind: Kd=2.4nM
    45224 1r8e:A (2.4) BS02 P4P ? GO:0003677 ... P39075 14985361
    45225 1r8k:A (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    45226 1r8k:B (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    45227 1r8l:A (2.6) BS01 CA 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 15312766
    45228 1r8l:B (2.6) BS01 CA 3.2.1.-
    3.2.1.89    		 GO:0015926 ... Q65CX5 15312766
    45229 1r8q:A (1.86) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 14654833
    45230 1r8q:A (1.86) BS02 AFB 3.6.5.2 GO:0000139 ... P84080 14654833
    45231 1r8q:B (1.86) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 14654833
    45232 1r8q:B (1.86) BS02 AFB 3.6.5.2 GO:0000139 ... P84080 14654833
    45233 1r8q:E (1.86) BS01 AFB ? GO:0005085 ... Q99418 14654833
    45234 1r8q:E (1.86) BS02 ZN ? GO:0005085 ... Q99418 14654833
    45235 1r8q:F (1.86) BS01 AFB ? GO:0005085 ... Q99418 14654833
    45236 1r8s:A (1.46) BS01 GDP 3.6.5.2 GO:0000139 ... P84080 14654833
    45237 1r8s:E (1.46) BS01 SO3 ? GO:0005085 ... Q99418 14654833
    45238 1r8u:B (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 14594809
    45239 1r8u:B (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 14594809
    45240 1r8u:B (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 14594809
    45241 1r9c:A (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    45242 1r9c:B (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    45243 1r9d:A (1.8) BS01 GOL ? GO:0003824 ... Q8GEZ8 15096031
    45244 1r9d:B (1.8) BS01 GOL ? GO:0003824 ... Q8GEZ8 15096031
    45245 1r9f:A (1.85) BS01 rna ? GO:0044423 ... P11690 14661029
    45246 1r9f:A (1.85) BS02 rna ? GO:0044423 ... P11690 14661029
    45247 1r9j:A (2.22) BS01 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45248 1r9j:A (2.22) BS02 TPP 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45249 1r9j:A (2.22) BS03 TPP 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45250 1r9j:B (2.22) BS01 TPP 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45251 1r9j:B (2.22) BS02 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45252 1r9j:B (2.22) BS03 TPP 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    45253 1r9n:A (2.3) BS01 peptide 3.4.14.5 GO:0001618 ... P27487 14718659
    45254 1r9n:B (2.3) BS01 peptide 3.4.14.5 GO:0001618 ... P27487 14718659
    45255 1r9n:C (2.3) BS01 peptide 3.4.14.5 GO:0001618 ... P27487 14718659
    45256 1r9n:D (2.3) BS01 peptide 3.4.14.5 GO:0001618 ... P27487 14718659
    45257 1r9o:A (2.0) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 15181000
    45258 1r9o:A (2.0) BS02 FLP 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 15181000
    45259 1r9p:A (-1.00) BS01 ZN ? GO:0005506 ... Q57074 15522305
    45260 1r9q:A (2.05) BS01 PBE ? GO:0005515 ... P0AFM2 14612446
    45261 1r9s:A (4.25) BS01 rna 2.7.7.6 GO:0000428 ... P04050 15537538
    45262 1r9s:A (4.25) BS02 dna 2.7.7.6 GO:0000428 ... P04050 15537538
    45263 1r9s:A (4.25) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    45264 1r9s:A (4.25) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    45265 1r9s:B (4.25) BS01 rna 2.7.7.6 GO:0000428 ... P08518 15537538
    45266 1r9s:B (4.25) BS02 dna 2.7.7.6 GO:0000428 ... P08518 15537538
    45267 1r9s:B (4.25) BS03 UTP 2.7.7.6 GO:0000428 ... P08518 15537538
    45268 1r9s:B (4.25) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    45269 1r9s:C (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    45270 1r9s:I (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    45271 1r9s:I (4.25) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    45272 1r9s:J (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    45273 1r9s:L (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    45274 1r9t:A (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P04050 15537538
    45275 1r9t:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 15537538
    45276 1r9t:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    45277 1r9t:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    45278 1r9t:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    45279 1r9t:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P08518 15537538
    45280 1r9t:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 15537538
    45281 1r9t:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    45282 1r9t:B (3.5) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 15537538
    45283 1r9t:C (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    45284 1r9t:E (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P20434 15537538
    45285 1r9t:I (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    45286 1r9t:I (3.5) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    45287 1r9t:J (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    45288 1r9t:L (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    45289 1r9x:A (1.58) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45290 1r9y:A (1.57) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45291 1r9z:A (1.32) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45292 1ra0:A (1.12) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45293 1ra0:A (1.12) BS02 FPY 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45294 1ra1:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45295 1ra1:A (1.9) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    45296 1ra2:A (1.6) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45297 1ra3:A (1.8) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    45298 1ra3:A (1.8) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45299 1ra5:A (1.4) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45300 1ra5:A (1.4) BS02 FPY 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45301 1ra7:A (2.35) BS01 GTP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 15306852
    45302 1ra8:A (1.8) BS01 ATR 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45303 1ra9:A (1.55) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    45304 1raa:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45305 1raa:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45306 1raa:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45307 1raa:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45308 1rab:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45309 1rab:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45310 1rab:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45311 1rab:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45312 1rac:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45313 1rac:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45314 1rac:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45315 1rac:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45316 1rad:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45317 1rad:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45318 1rad:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45319 1rad:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45320 1rae:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45321 1rae:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45322 1rae:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45323 1rae:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45324 1raf:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45325 1raf:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45326 1raf:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45327 1raf:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45328 1rag:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45329 1rag:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45330 1rag:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45331 1rag:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45332 1rah:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45333 1rah:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45334 1rah:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45335 1rah:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45336 1rai:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45337 1rai:B (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45338 1rai:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    45339 1rai:D (2.5) BS02 CTP ? GO:0005515 ... P0A7F3 8441751
    45340 1rak:A (1.32) BS01 FE 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45341 1rak:A (1.32) BS02 FPY 3.5.4.-
    3.5.4.1    		 GO:0004131 ... P25524 15381761
    45342 1ram:A (2.7) BS01 dna ? GO:0003677 ... Q04207 9437432
    45343 1ram:A (2.7) BS02 dna ? GO:0003677 ... Q04207 9437432
    45344 1ram:B (2.7) BS01 dna ? GO:0003677 ... Q04207 9437432
    45345 1rao:A (1.56) BS01 AMP 2.7.6.3 GO:0000287 ... P26281 15016362
    45346 1rao:A (1.56) BS02 HH2 2.7.6.3 GO:0000287 ... P26281 15016362
    45347 1rap:A (2.25) BS01 HEM ? GO:0005515 ... P00044 8401228
    45348 1raq:A (1.9) BS01 HEC ? GO:0005515 ... P00044 8401228
    45349 1rar:A (1.9) BS01 AEN 4.6.1.18 GO:0003676 ... P61823 8357795
    45350 1ras:A (1.7) BS01 AEN 4.6.1.18 GO:0003676 ... P61823 8357795
    45351 1ray:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8482389
    45352 1ray:A (1.8) BS02 AZI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8482389 BindingDB: Ki=1500000nM
    45353 1raz:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8482389
    45354 1rb0:A (1.35) BS01 HH2 2.7.6.3 GO:0000287 ... P26281 15016362
    45355 1rb2:A (2.1) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45356 1rb2:B (2.1) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45357 1rb3:A (2.3) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    45358 1rb3:A (2.3) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45359 1rb3:B (2.3) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    45360 1rb3:B (2.3) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    45361 1rb4:A (1.9) BS01 peptide ? GO:0003700 ... P03069 14752198
    45362 1rb4:B (1.9) BS01 peptide ? GO:0003700 ... P03069 14752198
    45363 1rb7:A (2.1) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 14993707
    45364 1rb7:B (2.1) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 14993707
    45365 1rb8:F (3.5) BS01 peptide ? GO:0005198 ... P08767 15046981
    45366 1rb8:F (3.5) BS02 dna ? GO:0005198 ... P08767 15046981
    45367 1rb9:A (0.92) BS01 FE2 ? GO:0005506 ... P00269 N/A
    45368 1rbc:A (2.0) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45369 1rbd:A (1.7) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45370 1rbe:A (1.75) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45371 1rbf:A (1.8) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45372 1rbg:A (1.8) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45373 1rbh:A (1.7) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45374 1rbi:A (1.8) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 1463720
    45375 1rbj:A (2.7) BS01 dna 4.6.1.18 GO:0003676 ... P61823 15299737
    45376 1rbl:A (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45377 1rbl:A (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45378 1rbl:A (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45379 1rbl:B (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45380 1rbl:B (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45381 1rbl:B (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45382 1rbl:C (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45383 1rbl:C (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45384 1rbl:C (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45385 1rbl:D (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45386 1rbl:D (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45387 1rbl:D (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45388 1rbl:E (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45389 1rbl:E (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45390 1rbl:E (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45391 1rbl:F (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45392 1rbl:F (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45393 1rbl:F (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45394 1rbl:G (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45395 1rbl:G (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45396 1rbl:G (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45397 1rbl:H (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45398 1rbl:H (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    45399 1rbl:H (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    45400 1rbm:A (2.3) BS01 KT5 2.1.2.2
    6.3.3.1
    6.3.4.13    		 GO:0004644 ... P22102 N/A MOAD: Ki=4nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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