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BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    2 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    3 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    4 9bdp:AL04 (3.7) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    5 9bdp:AL04 (3.7) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    6 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    7 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    8 9bdp:AL06 (3.7) BS01 rna N/A N/A G1SKF7 38718836
    9 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    10 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    11 9bdp:AL08 (3.7) BS01 rna N/A N/A G1STW0 38718836
    12 9bdp:AL08 (3.7) BS02 rna N/A N/A G1STW0 38718836
    13 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    14 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    15 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    16 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    17 9bdp:AL11 (3.7) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    18 9bdp:AL11 (3.7) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    19 9bdp:AL11 (3.7) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    20 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    21 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    22 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    23 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    24 9bdp:AL14 (3.7) BS01 rna N/A N/A G1SZ12 38718836
    25 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    26 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    27 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    28 9bdp:AL17 (3.7) BS01 rna N/A N/A G1SCJ6 38718836
    29 9bdp:AL17 (3.7) BS02 rna N/A N/A G1SCJ6 38718836
    30 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    31 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    32 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    33 9bdp:AL20 (3.7) BS01 rna N/A N/A G1TTY7 38718836
    34 9bdp:AL20 (3.7) BS02 rna N/A N/A G1TTY7 38718836
    35 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    36 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    37 9bdp:AL22 (3.7) BS01 rna N/A N/A G1TSG1 38718836
    38 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    39 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    40 9bdp:AL24 (3.7) BS01 rna N/A N/A G1SE28 38718836
    41 9bdp:AL25 (3.7) BS01 rna N/A N/A G1SE76 38718836
    42 9bdp:AL25 (3.7) BS02 rna N/A N/A G1SE76 38718836
    43 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    44 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    45 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    46 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    47 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    48 9bdp:AL30 (3.7) BS01 rna N/A N/A G1TDL2 38718836
    49 9bdp:AL31 (3.7) BS01 rna N/A N/A G1SHG0 38718836
    50 9bdp:AL32 (3.7) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    51 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    52 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    53 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    54 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    55 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    56 9bdp:AL37 (3.7) BS01 rna N/A N/A U3KPD5 38718836
    57 9bdp:AL37 (3.7) BS02 rna N/A N/A U3KPD5 38718836
    58 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    59 9bdp:AL39 (3.7) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    60 9bdp:AL39 (3.7) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    61 9bdp:AL40 (3.7) BS01 rna N/A N/A P0DXC2 38718836
    62 9bdp:AL42 (3.7) BS01 rna N/A N/A A0A5F9D391 38718836
    63 9bdp:AL42 (3.7) BS02 rna N/A N/A A0A5F9D391 38718836
    64 9bdp:AL43 (3.7) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    65 9bdp:ALNW (3.7) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    66 9bdp:ALP0 (3.7) BS01 rna N/A N/A G1SPK4 38718836
    67 9bdp:ANG (3.7) BS01 rna N/A N/A P03950 38718836
    68 9bdp:ANG (3.7) BS02 rna N/A N/A P03950 38718836
    69 9bdp:ANG (3.7) BS03 rna N/A N/A P03950 38718836
    70 9bdp:ANG (3.7) BS04 rna N/A N/A P03950 38718836
    71 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    72 9bdp:AS00 (3.7) BS01 rna N/A N/A G1TJH8 38718836
    73 9bdp:AS01 (3.7) BS01 rna N/A N/A G1SS70 38718836
    74 9bdp:AS02 (3.7) BS01 rna N/A N/A O18789 38718836
    75 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    76 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    77 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    78 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    79 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    80 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    81 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    82 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    83 9bdp:AS10 (3.7) BS01 rna N/A N/A G1TPV3 38718836
    84 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    85 9bdp:AS12 (3.7) BS01 rna N/A N/A G1SFR8 38718836
    86 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    87 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    88 9bdp:AS14 (3.7) BS01 rna N/A N/A G1T1F0 38718836
    89 9bdp:AS15 (3.7) BS01 rna N/A N/A G1U0Q2 38718836
    90 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    91 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    92 9bdp:AS18 (3.7) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    93 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    94 9bdp:AS20 (3.7) BS01 rna N/A N/A G1SIZ2 38718836
    95 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    96 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    97 9bdp:AS24 (3.7) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    98 9bdp:AS25 (3.7) BS01 rna N/A N/A N/A 38718836
    99 9bdp:AS26 (3.7) BS01 rna N/A N/A G1TFE8 38718836
    100 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    101 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    102 9bdp:AS29 (3.7) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    103 9bdp:AS30 (3.7) BS01 rna N/A N/A G1T8A2 38718836
    104 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    105 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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