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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8y39:1 (3.6) BS01 rna N/A GO:0005737 ... P66232 38992047
    2 8y39:2 (3.6) BS01 rna N/A GO:0005840 ... P66254 38992047
    3 8y39:3 (3.6) BS01 rna N/A GO:0003735 ... P66277 38992047
    4 8y39:4 (3.6) BS01 rna N/A GO:0005737 ... P66300 38992047
    5 8y39:C (3.6) BS01 rna N/A GO:0002181 ... P60433 38992047
    6 8y39:D (3.6) BS01 rna N/A GO:0003735 ... P60450 38992047
    7 8y39:E (3.6) BS01 rna N/A GO:0003735 ... P61060 38992047
    8 8y39:F (3.6) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    9 8y39:F (3.6) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    10 8y39:G (3.6) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    11 8y39:H (3.6) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    12 8y39:I (3.6) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    13 8y39:I (3.6) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    14 8y39:J (3.6) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    15 8y39:K (3.6) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    16 8y39:K (3.6) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    17 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    18 8y39:M (3.6) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    19 8y39:M (3.6) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    20 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    21 8y39:O (3.6) BS01 rna N/A GO:0000027 ... P66109 38992047
    22 8y39:P (3.6) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    23 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    24 8y39:R (3.6) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    25 8y39:S (3.6) BS01 rna N/A GO:0005840 ... P60736 38992047
    26 8y39:T (3.6) BS01 rna N/A N/A Q7A1S4 38992047
    27 8y39:U (3.6) BS01 rna N/A N/A P66134 38992047
    28 8y39:U (3.6) BS02 rna N/A N/A P66134 38992047
    29 8y39:V (3.6) BS01 rna N/A GO:0005840 ... P66154 38992047
    30 8y39:W (3.6) BS01 rna N/A GO:0005840 ... P66174 38992047
    31 8y39:X (3.6) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    32 8y39:X (3.6) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    33 8y39:Z (3.6) BS01 rna N/A N/A P66211 38992047
    34 8y39:b (3.6) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    35 8y39:c (3.6) BS01 rna N/A GO:0003729 ... P66554 38992047
    36 8y39:d (3.6) BS01 rna N/A GO:0003735 ... P66564 38992047
    37 8y39:e (3.6) BS01 rna N/A GO:0005737 ... P66580 38992047
    38 8y39:f (3.6) BS01 rna N/A GO:0003735 ... P66596 38992047
    39 8y39:g (3.6) BS01 rna N/A GO:0000028 ... P66617 38992047
    40 8y39:h (3.6) BS01 rna N/A GO:0003735 ... P66631 38992047
    41 8y39:i (3.6) BS01 rna N/A GO:0003723 ... P66647 38992047
    42 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    43 8y39:k (3.6) BS01 rna N/A GO:0005840 ... P66358 38992047
    44 8y39:l (3.6) BS01 rna N/A N/A A0A133PZQ5 38992047
    45 8y39:m (3.6) BS01 rna N/A GO:0000049 ... P66389 38992047
    46 8y39:n (3.6) BS01 rna N/A GO:0003735 ... P66413 38992047
    47 8y39:o (3.6) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    48 8y39:p (3.6) BS01 rna N/A GO:0003735 ... P66441 38992047
    49 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    50 8y39:r (3.6) BS01 rna N/A GO:0003735 ... P66469 38992047
    51 8y39:s (3.6) BS01 rna N/A N/A A0A133PYC3 38992047
    52 8y39:t (3.6) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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