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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    2 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    3 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    4 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    5 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    6 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    7 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    8 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    9 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    10 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    11 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    12 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    13 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    14 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    15 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    16 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    17 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    18 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    19 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    20 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    21 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    22 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    23 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    24 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    25 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    26 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    27 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    28 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    29 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    30 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    31 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    32 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    33 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    34 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    35 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    36 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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