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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wkk:P (3.3) BS01 peptide N/A N/A P26462 N/A
    2 8wkk:Q (3.3) BS01 peptide N/A N/A P16437 N/A
    3 8wkk:Q (3.3) BS02 peptide N/A N/A P16437 N/A
    4 8wkk:R (3.3) BS01 peptide N/A N/A P16437 N/A
    5 8wkk:R (3.3) BS02 peptide N/A N/A P16437 N/A
    6 8wkk:S (3.3) BS01 peptide N/A N/A P16437 N/A
    7 8wkk:S (3.3) BS02 peptide N/A N/A P16437 N/A
    8 8wkk:T (3.3) BS01 peptide N/A N/A P16437 N/A
    9 8wkk:T (3.3) BS02 peptide N/A N/A P16437 N/A
    10 8wkk:U (3.3) BS01 peptide N/A N/A P16437 N/A
    11 8wkk:U (3.3) BS02 peptide N/A N/A P16437 N/A
    12 8wkk:V (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    13 8wkk:V (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    14 8wkk:W (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    15 8wkk:X (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    16 8wkk:Y (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    17 8wkk:Z (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    18 8wkk:a (3.3) BS01 peptide N/A N/A P0A1I7 N/A
    19 8wkk:a (3.3) BS02 peptide N/A N/A P0A1I7 N/A
    20 8wkk:m (3.3) BS01 peptide N/A N/A P16323 N/A
    21 8wkk:m (3.3) BS02 peptide N/A N/A P16323 N/A
    22 8wkk:n (3.3) BS01 peptide N/A N/A P16323 N/A
    23 8wkk:n (3.3) BS02 peptide N/A N/A P16323 N/A
    24 8wkk:o (3.3) BS01 peptide N/A N/A P16323 N/A
    25 8wkk:o (3.3) BS02 peptide N/A N/A P16323 N/A
    26 8wkk:p (3.3) BS01 peptide N/A N/A P16323 N/A
    27 8wkk:p (3.3) BS02 peptide N/A N/A P16323 N/A
    28 8wkk:q (3.3) BS01 peptide N/A N/A P16323 N/A
    29 8wkk:q (3.3) BS02 peptide N/A N/A P16323 N/A
    30 8wkk:u (3.3) BS01 peptide N/A N/A P0A1J3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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