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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8why:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    2 8why:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    3 8why:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    4 8why:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    5 8why:4 (2.7) BS01 rna ? GO:0003735 ... A0R215 38245551
    6 8why:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    7 8why:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    8 8why:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    9 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    10 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    11 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    12 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    13 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    14 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    15 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    16 8why:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    17 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    18 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    19 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    20 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    21 8why:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    22 8why:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    23 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    24 8why:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    25 8why:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    26 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    27 8why:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    28 8why:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    29 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    30 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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