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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    2 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    3 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    4 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    5 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    6 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    7 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    8 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    9 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    10 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    11 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    12 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    13 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    14 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    15 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    16 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    17 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    18 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    19 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    20 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    21 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    22 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    23 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    24 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    25 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    26 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    27 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    28 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    29 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    30 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    31 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    32 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    33 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    34 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    35 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    36 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    37 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    38 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    39 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    40 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    41 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    42 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    43 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    44 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    45 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    46 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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