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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    2 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    3 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    4 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    5 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    6 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    7 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    8 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    9 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    10 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    11 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    12 8v83:I (2.53) BS01 rna ? GO:0003674 ... P53136 38632236
    13 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    14 8v83:K (2.53) BS01 rna ? GO:0000462 ... P38779 38632236
    15 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    16 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    17 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    18 8v83:N (2.53) BS01 rna ? GO:0002181 ... P05748 38632236
    19 8v83:N (2.53) BS02 rna ? GO:0002181 ... P05748 38632236
    20 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    21 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    22 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    23 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    24 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    25 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    26 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    27 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    28 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    29 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    30 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    31 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    32 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    33 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    34 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    35 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    36 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    37 8v83:i (2.53) BS01 rna ? GO:0002181 ... P05745 38632236
    38 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    39 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    40 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    41 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    42 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    43 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    44 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    45 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    46 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    47 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    48 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    49 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    50 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    51 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    52 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    53 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    54 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    55 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    56 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    57 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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