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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8tpu:A0 (4.1) BS01 rna N/A N/A Q8IEM3 N/A
    2 8tpu:A1 (4.1) BS01 rna N/A N/A Q8IKM5 N/A
    3 8tpu:A2 (4.1) BS01 rna N/A N/A N/A N/A
    4 8tpu:A3 (4.1) BS01 rna N/A N/A Q8IIB4 N/A
    5 8tpu:A3 (4.1) BS02 rna N/A N/A Q8IIB4 N/A
    6 8tpu:A4 (4.1) BS01 rna N/A N/A C6S3J6 N/A
    7 8tpu:A5 (4.1) BS01 rna N/A N/A O97250 N/A
    8 8tpu:A5 (4.1) BS02 rna N/A N/A O97250 N/A
    9 8tpu:A6 (4.1) BS01 rna N/A N/A N/A N/A
    10 8tpu:A7 (4.1) BS01 rna N/A N/A Q8I463 N/A
    11 8tpu:A8 (4.1) BS01 rna N/A N/A N/A N/A
    12 8tpu:A9 (4.1) BS01 rna N/A N/A N/A N/A
    13 8tpu:AD (4.1) BS01 rna N/A N/A Q8I3T9 N/A
    14 8tpu:AE (4.1) BS01 rna N/A N/A Q8IJC6 N/A
    15 8tpu:AF (4.1) BS01 rna N/A N/A Q8I431 N/A
    16 8tpu:AG (4.1) BS01 rna N/A N/A Q8IBQ6 N/A
    17 8tpu:AG (4.1) BS02 rna N/A N/A Q8IBQ6 N/A
    18 8tpu:AH (4.1) BS01 rna N/A N/A Q8IE85 N/A
    19 8tpu:AI (4.1) BS01 rna N/A N/A A0A5K1K8V8 N/A
    20 8tpu:AJ (4.1) BS01 rna N/A N/A Q8ILL2 N/A
    21 8tpu:AK (4.1) BS01 rna N/A N/A Q8IJZ7 N/A
    22 8tpu:AL (4.1) BS01 rna N/A N/A Q8IAX6 N/A
    23 8tpu:AL (4.1) BS02 rna N/A N/A Q8IAX6 N/A
    24 8tpu:AM (4.1) BS01 rna N/A N/A Q8IE09 N/A
    25 8tpu:AM (4.1) BS02 rna N/A N/A Q8IE09 N/A
    26 8tpu:AN (4.1) BS01 rna N/A N/A Q8ILE8 N/A
    27 8tpu:AO (4.1) BS01 rna N/A N/A C6KT23 N/A
    28 8tpu:AP (4.1) BS01 rna N/A N/A N/A N/A
    29 8tpu:AP (4.1) BS02 rna N/A N/A N/A N/A
    30 8tpu:AQ (4.1) BS01 rna N/A N/A Q8ILV2 N/A
    31 8tpu:AQ (4.1) BS02 rna N/A N/A Q8ILV2 N/A
    32 8tpu:AR (4.1) BS01 rna N/A N/A Q8ILL3 N/A
    33 8tpu:AR (4.1) BS02 rna N/A N/A Q8ILL3 N/A
    34 8tpu:AS (4.1) BS01 rna N/A N/A C0H5G3 N/A
    35 8tpu:AT (4.1) BS01 rna N/A N/A C6KSY6 N/A
    36 8tpu:AT (4.1) BS02 rna N/A N/A C6KSY6 N/A
    37 8tpu:AU (4.1) BS01 rna N/A N/A Q8IDS6 N/A
    38 8tpu:AU (4.1) BS02 rna N/A N/A Q8IDS6 N/A
    39 8tpu:AV (4.1) BS01 rna N/A N/A N/A N/A
    40 8tpu:AW (4.1) BS01 rna N/A N/A N/A N/A
    41 8tpu:AW (4.1) BS02 rna N/A N/A N/A N/A
    42 8tpu:AX (4.1) BS01 rna N/A N/A Q8IB51 N/A
    43 8tpu:AY (4.1) BS01 rna N/A N/A Q8IE82 N/A
    44 8tpu:AY (4.1) BS02 rna N/A N/A Q8IE82 N/A
    45 8tpu:AZ (4.1) BS01 rna N/A N/A O77364 N/A
    46 8tpu:AZ (4.1) BS02 rna N/A N/A O77364 N/A
    47 8tpu:Aa (4.1) BS01 rna N/A N/A N/A N/A
    48 8tpu:Ab (4.1) BS01 rna N/A N/A Q8I713 N/A
    49 8tpu:Ac (4.1) BS01 rna N/A N/A C0H4L5 N/A
    50 8tpu:Ac (4.1) BS02 rna N/A N/A C0H4L5 N/A
    51 8tpu:Ad (4.1) BS01 rna N/A N/A Q8II62 N/A
    52 8tpu:Ae (4.1) BS01 rna N/A N/A C0H4H3 N/A
    53 8tpu:Ae (4.1) BS02 rna N/A N/A C0H4H3 N/A
    54 8tpu:Af (4.1) BS01 rna N/A N/A Q8ID50 N/A
    55 8tpu:Ag (4.1) BS01 rna N/A N/A C6S3G4 N/A
    56 8tpu:Ag (4.1) BS02 rna N/A N/A C6S3G4 N/A
    57 8tpu:Ah (4.1) BS01 rna N/A N/A N/A N/A
    58 8tpu:Ai (4.1) BS01 rna N/A N/A N/A N/A
    59 8tpu:Ai (4.1) BS02 rna N/A N/A N/A N/A
    60 8tpu:S1 (4.1) BS01 rna N/A N/A Q8I3R6 N/A
    61 8tpu:S2 (4.1) BS01 rna N/A N/A Q8ILN8 N/A
    62 8tpu:S3 (4.1) BS01 rna N/A N/A O96258 N/A
    63 8tpu:S4 (4.1) BS01 rna N/A N/A Q8IEN2 N/A
    64 8tpu:S5 (4.1) BS01 rna N/A N/A N/A N/A
    65 8tpu:S6 (4.1) BS01 rna N/A N/A O96269 N/A
    66 8tpu:S8 (4.1) BS01 rna N/A N/A Q8IBA0 N/A
    67 8tpu:SB (4.1) BS01 rna N/A N/A O97313 N/A
    68 8tpu:SC (4.1) BS01 rna N/A N/A Q8IJD4 N/A
    69 8tpu:SD (4.1) BS01 rna N/A N/A Q8IKH8 N/A
    70 8tpu:SE (4.1) BS01 rna N/A N/A Q8I3R0 N/A
    71 8tpu:SF (4.1) BS01 rna N/A N/A Q8IIU8 N/A
    72 8tpu:SG (4.1) BS01 rna N/A N/A Q8IL02 N/A
    73 8tpu:SH (4.1) BS01 rna N/A N/A Q8IDR9 N/A
    74 8tpu:SI (4.1) BS01 rna N/A N/A Q8IBN5 N/A
    75 8tpu:SJ (4.1) BS01 rna N/A N/A Q8IET7 N/A
    76 8tpu:SK (4.1) BS01 rna N/A N/A O77395 N/A
    77 8tpu:SL (4.1) BS01 rna N/A N/A Q8IM10 N/A
    78 8tpu:SL (4.1) BS02 rna N/A N/A Q8IM10 N/A
    79 8tpu:SM (4.1) BS01 rna N/A N/A A0A0L7M7C8 N/A
    80 8tpu:SN (4.1) BS01 rna N/A N/A Q8IK02 N/A
    81 8tpu:SO (4.1) BS01 rna N/A N/A Q8IBQ5 N/A
    82 8tpu:SP (4.1) BS01 rna N/A N/A A0A5K1K925 N/A
    83 8tpu:SQ (4.1) BS01 rna N/A N/A O97248 N/A
    84 8tpu:SS (4.1) BS01 rna N/A N/A Q8IIA2 N/A
    85 8tpu:ST (4.1) BS01 rna N/A N/A C0H4K8 N/A
    86 8tpu:SU (4.1) BS01 rna N/A N/A Q8IDB0 N/A
    87 8tpu:SV (4.1) BS01 rna N/A N/A O77381 N/A
    88 8tpu:SW (4.1) BS01 rna N/A N/A Q8I502 N/A
    89 8tpu:SX (4.1) BS01 rna N/A N/A C0H5C2 N/A
    90 8tpu:SY (4.1) BS01 rna N/A N/A Q8IFP2 N/A
    91 8tpu:SZ (4.1) BS01 rna N/A N/A Q8IHS5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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