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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rdv:A4 (2.6) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    2 8rdv:Af (2.6) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    3 8rdv:B (2.6) BS01 rna ? N/A A0A0M3V8U3 38355796
    4 8rdv:B (2.6) BS02 rna ? N/A A0A0M3V8U3 38355796
    5 8rdv:B (2.6) BS03 rna ? N/A A0A0M3V8U3 38355796
    6 8rdv:BQ (2.6) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    7 8rdv:Ba (2.6) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    8 8rdv:C1 (2.6) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    9 8rdv:CT (2.6) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    10 8rdv:Cl (2.6) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    11 8rdv:Dm (2.6) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    12 8rdv:E5 (2.6) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    13 8rdv:E9 (2.6) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    14 8rdv:F (2.6) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    15 8rdv:F (2.6) BS02 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    16 8rdv:F7 (2.6) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    17 8rdv:F7 (2.6) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    18 8rdv:F7 (2.6) BS03 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    19 8rdv:FG (2.6) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    20 8rdv:GR (2.6) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    21 8rdv:GS (2.6) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    22 8rdv:HK (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    23 8rdv:IX (2.6) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    24 8rdv:JY (2.6) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    25 8rdv:Je (2.6) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    26 8rdv:Je (2.6) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    27 8rdv:KU (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    28 8rdv:Kd (2.6) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    29 8rdv:L6 (2.6) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    30 8rdv:Lg (2.6) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    31 8rdv:Lg (2.6) BS02 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    32 8rdv:MB (2.6) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    33 8rdv:MM (2.6) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    34 8rdv:NV (2.6) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    35 8rdv:Nc (2.6) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    36 8rdv:Nc (2.6) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    37 8rdv:OL (2.6) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    38 8rdv:OL (2.6) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    39 8rdv:Oi (2.6) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    40 8rdv:Oi (2.6) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    41 8rdv:PO (2.6) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    42 8rdv:Pj (2.6) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    43 8rdv:QZ (2.6) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    44 8rdv:Qb (2.6) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    45 8rdv:R3 (2.6) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    46 8rdv:RF (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    47 8rdv:SP (2.6) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    48 8rdv:Sn (2.6) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    49 8rdv:TI (2.6) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    50 8rdv:To (2.6) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    51 8rdv:UC (2.6) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    52 8rdv:UC (2.6) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    53 8rdv:VH (2.6) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    54 8rdv:VH (2.6) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    55 8rdv:WD (2.6) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    56 8rdv:XE (2.6) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    57 8rdv:YW (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    58 8rdv:YW (2.6) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    59 8rdv:aA (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    60 8rdv:bk (2.6) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    61 8rdv:dh (2.6) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    62 8rdv:ep (2.6) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    63 8rdv:fJ (2.6) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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