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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rcl:12 (3.49) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    2 8rcl:32 (3.49) BS01 rna ? GO:0000027 ... P0AG51 38409277
    3 8rcl:32 (3.49) BS02 rna ? GO:0000027 ... P0AG51 38409277
    4 8rcl:4 (3.49) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    5 8rcl:4 (3.49) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    6 8rcl:4 (3.49) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    7 8rcl:62 (3.49) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    8 8rcl:B (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    9 8rcl:B (3.49) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    10 8rcl:B (3.49) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    11 8rcl:B2 (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    12 8rcl:C1 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    13 8rcl:C1 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    14 8rcl:C2 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    15 8rcl:C2 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    16 8rcl:D1 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    17 8rcl:D2 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    18 8rcl:E1 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    19 8rcl:E1 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    20 8rcl:E2 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    21 8rcl:E2 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    22 8rcl:F1 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    23 8rcl:F2 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    24 8rcl:G1 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    25 8rcl:G1 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    26 8rcl:G2 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    27 8rcl:G2 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    28 8rcl:G2 (3.49) BS03 rna ? GO:0000028 ... P02359 38409277
    29 8rcl:H1 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    30 8rcl:H2 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    31 8rcl:I1 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    32 8rcl:I1 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    33 8rcl:I2 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    34 8rcl:I2 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    35 8rcl:J1 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    36 8rcl:J2 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    37 8rcl:K1 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    38 8rcl:K2 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    39 8rcl:L1 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    40 8rcl:L2 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    41 8rcl:M1 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    42 8rcl:M2 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    43 8rcl:M2 (3.49) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    44 8rcl:N1 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    45 8rcl:N2 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    46 8rcl:O1 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    47 8rcl:O2 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    48 8rcl:O2 (3.49) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    49 8rcl:P1 (3.49) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    50 8rcl:Q1 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    51 8rcl:Q2 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    52 8rcl:R1 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    53 8rcl:R2 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    54 8rcl:S1 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    55 8rcl:S2 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    56 8rcl:T1 (3.49) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    57 8rcl:U1 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    58 8rcl:U1 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    59 8rcl:U2 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    60 8rcl:U2 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    61 8rcl:a2 (3.49) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    62 8rcl:b2 (3.49) BS01 rna ? GO:0000027 ... P60422 38409277
    63 8rcl:b2 (3.49) BS02 rna ? GO:0000027 ... P60422 38409277
    64 8rcl:e2 (3.49) BS01 rna ? GO:0000027 ... P62399 38409277
    65 8rcl:e2 (3.49) BS02 rna ? GO:0000027 ... P62399 38409277
    66 8rcl:e2 (3.49) BS03 rna ? GO:0000027 ... P62399 38409277
    67 8rcl:g2 (3.49) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    68 8rcl:h2 (3.49) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    69 8rcl:h2 (3.49) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    70 8rcl:i2 (3.49) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    71 8rcl:i2 (3.49) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    72 8rcl:l2 (3.49) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    73 8rcl:o2 (3.49) BS01 rna ? GO:0002181 ... P02413 38409277
    74 8rcl:o2 (3.49) BS02 MG ? GO:0002181 ... P02413 38409277
    75 8rcl:r2 (3.49) BS01 rna ? GO:0002181 ... P0C018 38409277
    76 8rcl:r2 (3.49) BS02 rna ? GO:0002181 ... P0C018 38409277
    77 8rcl:z2 (3.49) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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