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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8r0b:21 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    2 8r0b:22 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    3 8r0b:23 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    4 8r0b:2B (4.4) BS01 rna ? GO:0000398 ... P08579 38778104
    5 8r0b:2f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    6 8r0b:2g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    7 8r0b:41 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    8 8r0b:42 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    9 8r0b:43 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    10 8r0b:4e (4.4) BS01 rna ? GO:0000245 ... P62304 38778104
    11 8r0b:4f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    12 8r0b:4g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    13 8r0b:51 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    14 8r0b:52 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    15 8r0b:53 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    16 8r0b:5b (4.4) BS01 rna ? GO:0000387 ... P14678 38778104
    17 8r0b:5e (4.4) BS01 rna ? GO:0000245 ... P62304 38778104
    18 8r0b:5f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    19 8r0b:5g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    20 8r0b:63 (4.4) BS01 rna ? GO:0000398 ... P62310 38778104
    21 8r0b:68 (4.4) BS01 rna ? GO:0000398 ... O95777 38778104
    22 8r0b:7 (4.4) BS01 rna ? GO:0000389 ... Q15459 38778104
    23 8r0b:8 (4.4) BS01 rna ? GO:0000245 ... Q15428 38778104
    24 8r0b:A (4.4) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    25 8r0b:A (4.4) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    26 8r0b:A (4.4) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    27 8r0b:B1 (4.4) BS01 rna ? GO:0000245 ... O75533 38778104
    28 8r0b:B1 (4.4) BS02 rna ? GO:0000245 ... O75533 38778104
    29 8r0b:B2 (4.4) BS01 rna ? GO:0000398 ... Q13435 38778104
    30 8r0b:B6 (4.4) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    31 8r0b:D (4.4) BS01 rna ? GO:0000245 ... P83876 38778104
    32 8r0b:D (4.4) BS02 rna ? GO:0000245 ... P83876 38778104
    33 8r0b:E (4.4) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    34 8r0b:J (4.4) BS01 rna ? GO:0000244 ... O43395 38778104
    35 8r0b:L (4.4) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    36 8r0b:L (4.4) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    37 8r0b:M (4.4) BS01 rna ? GO:0000398 ... P55769 38778104
    38 8r0b:N (4.4) BS01 rna ? GO:0000244 ... O94906 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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