Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8r0a:21 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    2 8r0a:22 (5.8) BS01 rna ? GO:0000245 ... P62316 38778104
    3 8r0a:23 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    4 8r0a:2B (5.8) BS01 rna ? GO:0000398 ... P08579 38778104
    5 8r0a:2e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    6 8r0a:2f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    7 8r0a:2g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    8 8r0a:41 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    9 8r0a:42 (5.8) BS01 peptide ? GO:0000245 ... P62316 38778104
    10 8r0a:42 (5.8) BS02 rna ? GO:0000245 ... P62316 38778104
    11 8r0a:43 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    12 8r0a:4e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    13 8r0a:4f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    14 8r0a:4g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    15 8r0a:51 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    16 8r0a:52 (5.8) BS01 rna ? GO:0000245 ... P62316 38778104
    17 8r0a:53 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    18 8r0a:5b (5.8) BS01 rna ? GO:0000387 ... P14678 38778104
    19 8r0a:5e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    20 8r0a:5f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    21 8r0a:5g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    22 8r0a:63 (5.8) BS01 rna ? GO:0000398 ... P62310 38778104
    23 8r0a:68 (5.8) BS01 rna ? GO:0000398 ... O95777 38778104
    24 8r0a:8 (5.8) BS01 rna ? GO:0000245 ... Q15428 38778104
    25 8r0a:A (5.8) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    26 8r0a:A (5.8) BS02 peptide ? GO:0000244 ... Q6P2Q9 38778104
    27 8r0a:A (5.8) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    28 8r0a:A (5.8) BS04 rna ? GO:0000244 ... Q6P2Q9 38778104
    29 8r0a:B1 (5.8) BS01 rna ? GO:0000245 ... O75533 38778104
    30 8r0a:B1 (5.8) BS02 rna ? GO:0000245 ... O75533 38778104
    31 8r0a:B2 (5.8) BS01 rna ? GO:0000398 ... Q13435 38778104
    32 8r0a:B6 (5.8) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    33 8r0a:D (5.8) BS01 rna ? GO:0000245 ... P83876 38778104
    34 8r0a:D (5.8) BS02 rna ? GO:0000245 ... P83876 38778104
    35 8r0a:D (5.8) BS03 rna ? GO:0000245 ... P83876 38778104
    36 8r0a:J (5.8) BS01 rna ? GO:0000244 ... O43395 38778104
    37 8r0a:J (5.8) BS02 rna ? GO:0000244 ... O43395 38778104
    38 8r0a:L (5.8) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    39 8r0a:L (5.8) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    40 8r0a:M (5.8) BS01 rna ? GO:0000398 ... P55769 38778104
    41 8r0a:M (5.8) BS02 rna ? GO:0000398 ... P55769 38778104
    42 8r0a:R (5.8) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    43 8r0a:R (5.8) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    44 8r0a:S (5.8) BS01 peptide ? GO:0000387 ... O43290 38778104
    45 8r0a:S (5.8) BS02 rna ? GO:0000387 ... O43290 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218