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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8oz0:D (3.5) BS01 rna ? GO:0000423 ... P05198 38287194
    2 8oz0:D (3.5) BS02 rna ? GO:0000423 ... P05198 38287194
    3 8oz0:E (3.5) BS01 rna 3.6.5.3 GO:0000049 ... P41091 38287194
    4 8oz0:G (3.5) BS01 rna ? GO:0000049 ... P47813 38287194
    5 8oz0:G (3.5) BS02 rna ? GO:0000049 ... P47813 38287194
    6 8oz0:H (3.5) BS01 rna ? GO:0001732 ... P55010 38287194
    7 8oz0:H (3.5) BS02 rna ? GO:0001732 ... P55010 38287194
    8 8oz0:I (3.5) BS01 rna ? GO:0001732 ... P55884 38287194
    9 8oz0:J (3.5) BS01 rna ? GO:0001732 ... Q99613 38287194
    10 8oz0:J (3.5) BS02 rna ? GO:0001732 ... Q99613 38287194
    11 8oz0:L (3.5) BS01 rna ? GO:0001843 ... P62081 38287194
    12 8oz0:M (3.5) BS01 rna ? GO:0000028 ... P42677 38287194
    13 8oz0:O (3.5) BS01 rna ? GO:0002181 ... P15880 38287194
    14 8oz0:P (3.5) BS01 rna ? GO:0002181 ... P61247 38287194
    15 8oz0:Q (3.5) BS01 rna ? GO:0000028 ... P08865 38287194
    16 8oz0:R (3.5) BS01 rna ? GO:0002181 ... P62854 38287194
    17 8oz0:R (3.5) BS02 rna ? GO:0002181 ... P62854 38287194
    18 8oz0:R (3.5) BS03 ZN ? GO:0002181 ... P62854 38287194
    19 8oz0:S (3.5) BS01 rna ? GO:0000082 ... P62753 38287194
    20 8oz0:T (3.5) BS01 rna ? GO:0000028 ... P62263 38287194
    21 8oz0:U (3.5) BS01 rna ? GO:0001701 ... P20042 38287194
    22 8oz0:V (3.5) BS01 rna ? GO:0002181 ... P62277 38287194
    23 8oz0:X (3.5) BS01 rna ? GO:0002181 ... P62280 38287194
    24 8oz0:Y (3.5) BS01 rna ? GO:0002181 ... P62701 38287194
    25 8oz0:Z (3.5) BS01 rna ? GO:0002181 ... P46781 38287194
    26 8oz0:a (3.5) BS01 rna ? GO:0002181 ... P62266 38287194
    27 8oz0:b (3.5) BS01 rna ? GO:0003735 ... P62861 38287194
    28 8oz0:c (3.5) BS01 rna ? GO:0002181 ... P62244 38287194
    29 8oz0:d (3.5) BS01 rna ? GO:0000462 ... P62241 38287194
    30 8oz0:e (3.5) BS01 rna ? GO:0002181 ... P62847 38287194
    31 8oz0:f (3.5) BS01 rna ? GO:0000028 ... P46782 38287194
    32 8oz0:f (3.5) BS02 MG ? GO:0000028 ... P46782 38287194
    33 8oz0:g (3.5) BS01 rna ? GO:0000462 ... P62249 38287194
    34 8oz0:h (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    35 8oz0:h (3.5) BS02 rna 4.2.99.18 GO:0000977 ... P23396 38287194
    36 8oz0:i (3.5) BS01 rna ? GO:0002181 ... P46783 38287194
    37 8oz0:j (3.5) BS01 rna ? GO:0000028 ... P62841 38287194
    38 8oz0:k (3.5) BS01 rna ? GO:0001891 ... P63244 38287194
    39 8oz0:l (3.5) BS01 rna ? GO:0000028 ... P39019 38287194
    40 8oz0:m (3.5) BS01 rna ? GO:0002181 ... P62851 38287194
    41 8oz0:n (3.5) BS01 rna ? GO:0002181 ... P62269 38287194
    42 8oz0:o (3.5) BS01 rna ? GO:0002181 ... P62273 38287194
    43 8oz0:p (3.5) BS01 rna ? GO:0002181 ... P62979 38287194
    44 8oz0:p (3.5) BS02 ZN ? GO:0002181 ... P62979 38287194
    45 8oz0:q (3.5) BS01 rna ? GO:0002181 ... P25398 38287194
    46 8oz0:s (3.5) BS01 rna ? GO:0000028 ... P62857 38287194
    47 8oz0:v (3.5) BS01 rna ? GO:0002181 ... P08708 38287194
    48 8oz0:w (3.5) BS01 rna ? GO:0002181 ... P60866 38287194
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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