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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ooo:A (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    2 8ooo:A (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    3 8ooo:A (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    4 8ooo:B (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    5 8ooo:B (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    6 8ooo:B (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    7 8ooo:C (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    8 8ooo:C (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    9 8ooo:C (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    10 8ooo:D (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    11 8ooo:D (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    12 8ooo:D (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    13 8ooo:E (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    14 8ooo:E (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    15 8ooo:E (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    16 8ooo:F (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    17 8ooo:F (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    18 8ooo:F (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    19 8ooo:G (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    20 8ooo:G (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    21 8ooo:G (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    22 8ooo:H (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    23 8ooo:H (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    24 8ooo:H (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    25 8ooo:I (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    26 8ooo:I (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    27 8ooo:I (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    28 8ooo:J (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    29 8ooo:J (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    30 8ooo:J (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    31 8ooo:K (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    32 8ooo:K (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    33 8ooo:K (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    34 8ooo:L (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    35 8ooo:L (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    36 8ooo:L (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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