Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 434 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8jw0:L (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    202 8jw0:L (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    203 8jw0:L (2.9) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    204 8jw0:L (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    205 8jw0:L (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    206 8jw0:L (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    207 8jw0:L (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    208 8jw0:L (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    209 8jw0:L (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    210 8jw0:L (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    211 8jw0:L (2.9) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    212 8jw0:L (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    213 8jw0:L (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    214 8jw0:M (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    215 8jw0:M (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    216 8jw0:M (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    217 8jw0:M (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    218 8jw0:M (2.9) BS05 KC1 N/A GO:0009765 ... N/A 38319970
    219 8jw0:M (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    220 8jw0:M (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    221 8jw0:M (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    222 8jw0:M (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    223 8jw0:M (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    224 8jw0:M (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    225 8jw0:M (2.9) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    226 8jw0:M (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    227 8jw0:M (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    228 8jw0:M (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    229 8jw0:N (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    230 8jw0:N (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    231 8jw0:N (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    232 8jw0:N (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    233 8jw0:N (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    234 8jw0:N (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    235 8jw0:N (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    236 8jw0:N (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    237 8jw0:N (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    238 8jw0:N (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    239 8jw0:N (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    240 8jw0:N (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    241 8jw0:N (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    242 8jw0:N (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    243 8jw0:N (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    244 8jw0:O (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    245 8jw0:O (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    246 8jw0:O (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    247 8jw0:O (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    248 8jw0:O (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    249 8jw0:O (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    250 8jw0:O (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    251 8jw0:O (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    252 8jw0:O (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    253 8jw0:O (2.9) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    254 8jw0:O (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    255 8jw0:O (2.9) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    256 8jw0:O (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    257 8jw0:O (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    258 8jw0:O (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    259 8jw0:O (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    260 8jw0:P (2.9) BS01 CLA ? GO:0009765 ... Q38688 38319970
    261 8jw0:P (2.9) BS02 PID ? GO:0009765 ... Q38688 38319970
    262 8jw0:P (2.9) BS03 PID ? GO:0009765 ... Q38688 38319970
    263 8jw0:P (2.9) BS04 DD6 ? GO:0009765 ... Q38688 38319970
    264 8jw0:P (2.9) BS05 PID ? GO:0009765 ... Q38688 38319970
    265 8jw0:P (2.9) BS06 PID ? GO:0009765 ... Q38688 38319970
    266 8jw0:P (2.9) BS07 UIX ? GO:0009765 ... Q38688 38319970
    267 8jw0:P (2.9) BS08 CLA ? GO:0009765 ... Q38688 38319970
    268 8jw0:P (2.9) BS09 CLA ? GO:0009765 ... Q38688 38319970
    269 8jw0:P (2.9) BS10 KC1 ? GO:0009765 ... Q38688 38319970
    270 8jw0:P (2.9) BS11 CLA ? GO:0009765 ... Q38688 38319970
    271 8jw0:P (2.9) BS12 KC1 ? GO:0009765 ... Q38688 38319970
    272 8jw0:P (2.9) BS13 CLA ? GO:0009765 ... Q38688 38319970
    273 8jw0:P (2.9) BS14 CLA ? GO:0009765 ... Q38688 38319970
    274 8jw0:P (2.9) BS15 KC1 ? GO:0009765 ... Q38688 38319970
    275 8jw0:P (2.9) BS16 CLA ? GO:0009765 ... Q38688 38319970
    276 8jw0:Q (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    277 8jw0:Q (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    278 8jw0:Q (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    279 8jw0:Q (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    280 8jw0:Q (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    281 8jw0:Q (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    282 8jw0:Q (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    283 8jw0:Q (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    284 8jw0:Q (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    285 8jw0:Q (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    286 8jw0:Q (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    287 8jw0:Q (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    288 8jw0:Q (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    289 8jw0:Q (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    290 8jw0:Q (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    291 8jw0:T (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    292 8jw0:T (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    293 8jw0:T (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    294 8jw0:T (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    295 8jw0:T (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    296 8jw0:T (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    297 8jw0:T (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    298 8jw0:T (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    299 8jw0:T (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    300 8jw0:T (2.9) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    301 8jw0:T (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    302 8jw0:T (2.9) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    303 8jw0:T (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    304 8jw0:T (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    305 8jw0:T (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    306 8jw0:T (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    307 8jw0:T (2.9) BS17 PID N/A GO:0009765 ... N/A 38319970
    308 8jw0:a (2.9) BS01 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    309 8jw0:a (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    310 8jw0:a (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    311 8jw0:a (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    312 8jw0:a (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    313 8jw0:a (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    314 8jw0:a (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    315 8jw0:a (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    316 8jw0:a (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    317 8jw0:a (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    318 8jw0:a (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    319 8jw0:a (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    320 8jw0:a (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    321 8jw0:a (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    322 8jw0:a (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    323 8jw0:a (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    324 8jw0:a (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    325 8jw0:a (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    326 8jw0:a (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    327 8jw0:a (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    328 8jw0:a (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    329 8jw0:a (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    330 8jw0:a (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    331 8jw0:a (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    332 8jw0:a (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    333 8jw0:a (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    334 8jw0:a (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    335 8jw0:a (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    336 8jw0:a (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    337 8jw0:a (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    338 8jw0:a (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    339 8jw0:a (2.9) BS32 PQN 1.97.1.12 GO:0000287 ... P58309 38319970
    340 8jw0:a (2.9) BS33 SF4 1.97.1.12 GO:0000287 ... P58309 38319970
    341 8jw0:a (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    342 8jw0:a (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    343 8jw0:a (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    344 8jw0:a (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    345 8jw0:a (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    346 8jw0:a (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    347 8jw0:a (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    348 8jw0:a (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    349 8jw0:a (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    350 8jw0:b (2.9) BS01 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    351 8jw0:b (2.9) BS02 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    352 8jw0:b (2.9) BS03 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    353 8jw0:b (2.9) BS04 SF4 1.97.1.12 GO:0009507 ... P58383 38319970
    354 8jw0:b (2.9) BS05 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    355 8jw0:b (2.9) BS06 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    356 8jw0:b (2.9) BS07 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    357 8jw0:b (2.9) BS08 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    358 8jw0:b (2.9) BS09 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    359 8jw0:b (2.9) BS10 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    360 8jw0:b (2.9) BS11 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    361 8jw0:b (2.9) BS12 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    362 8jw0:b (2.9) BS13 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    363 8jw0:b (2.9) BS14 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    364 8jw0:b (2.9) BS15 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    365 8jw0:b (2.9) BS16 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    366 8jw0:b (2.9) BS17 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    367 8jw0:b (2.9) BS18 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    368 8jw0:b (2.9) BS19 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    369 8jw0:b (2.9) BS20 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    370 8jw0:b (2.9) BS21 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    371 8jw0:b (2.9) BS22 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    372 8jw0:b (2.9) BS23 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    373 8jw0:b (2.9) BS24 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    374 8jw0:b (2.9) BS25 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    375 8jw0:b (2.9) BS26 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    376 8jw0:b (2.9) BS27 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    377 8jw0:b (2.9) BS28 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    378 8jw0:b (2.9) BS29 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    379 8jw0:b (2.9) BS30 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    380 8jw0:b (2.9) BS31 PQN 1.97.1.12 GO:0009507 ... P58383 38319970
    381 8jw0:b (2.9) BS32 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    382 8jw0:b (2.9) BS33 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    383 8jw0:b (2.9) BS34 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    384 8jw0:b (2.9) BS35 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    385 8jw0:b (2.9) BS36 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    386 8jw0:b (2.9) BS37 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    387 8jw0:b (2.9) BS38 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    388 8jw0:b (2.9) BS39 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    389 8jw0:b (2.9) BS40 DD6 1.97.1.12 GO:0009507 ... P58383 38319970
    390 8jw0:b (2.9) BS41 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    391 8jw0:b (2.9) BS42 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    392 8jw0:b (2.9) BS43 CLA 1.97.1.12 GO:0009507 ... P58383 38319970
    393 8jw0:c (2.9) BS01 SF4 N/A GO:0009055 ... N/A 38319970
    394 8jw0:c (2.9) BS02 SF4 N/A GO:0009055 ... N/A 38319970
    395 8jw0:f (2.9) BS01 CLA N/A GO:0009522 ... N/A 38319970
    396 8jw0:f (2.9) BS02 CLA N/A GO:0009522 ... N/A 38319970
    397 8jw0:f (2.9) BS03 CLA N/A GO:0009522 ... N/A 38319970
    398 8jw0:f (2.9) BS04 CLA N/A GO:0009522 ... N/A 38319970
    399 8jw0:f (2.9) BS05 CLA N/A GO:0009522 ... N/A 38319970
    400 8jw0:f (2.9) BS06 CLA N/A GO:0009522 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218