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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ixa:A (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    2 8ixa:B (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    3 8ixa:C (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    4 8ixa:D (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    5 8ixa:E (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    6 8ixa:F (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    7 8ixa:G (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    8 8ixa:H (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    9 8ixa:I (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    10 8ixa:J (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    11 8ixa:K (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    12 8ixa:L (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    13 8ixa:M (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    14 8ixa:N (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    15 8ixa:O (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    16 8ixa:P (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    17 8ixa:Q (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    18 8ixa:R (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    19 8ixa:S (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    20 8ixa:T (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    21 8ixa:U (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    22 8ixa:V (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    23 8ixa:W (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    24 8ixa:X (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    25 8ixa:Y (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    26 8ixa:Z (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    27 8ixa:a (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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