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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8idy:4 (3.0) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    2 8idy:4 (3.0) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    3 8idy:6 (3.0) BS01 rna ? GO:0000054 ... P56537 37491604
    4 8idy:7 (3.0) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    5 8idy:9 (3.0) BS01 rna ? GO:0003676 ... O00488 37491604
    6 8idy:A (3.0) BS01 rna ? GO:0003723 ... Q13823 37491604
    7 8idy:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    8 8idy:B (3.0) BS01 rna ? GO:0002181 ... P39023 37491604
    9 8idy:C (3.0) BS01 rna ? GO:0002181 ... P47914 37491604
    10 8idy:D (3.0) BS01 rna ? GO:0002181 ... P36578 37491604
    11 8idy:D (3.0) BS02 rna ? GO:0002181 ... P36578 37491604
    12 8idy:E (3.0) BS01 rna ? GO:0002181 ... P62888 37491604
    13 8idy:F (3.0) BS01 rna ? GO:0002181 ... P49207 37491604
    14 8idy:G (3.0) BS01 rna ? GO:0000470 ... P62424 37491604
    15 8idy:G (3.0) BS02 rna ? GO:0000470 ... P62424 37491604
    16 8idy:H (3.0) BS01 rna ? GO:0000463 ... P42766 37491604
    17 8idy:H (3.0) BS02 rna ? GO:0000463 ... P42766 37491604
    18 8idy:I (3.0) BS01 rna ? GO:0002181 ... P32969 37491604
    19 8idy:J (3.0) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    20 8idy:K (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    21 8idy:L (3.0) BS01 rna ? GO:0002181 ... P46776 37491604
    22 8idy:M (3.0) BS01 rna ? GO:0002181 ... P61927 37491604
    23 8idy:M (3.0) BS02 rna ? GO:0002181 ... P61927 37491604
    24 8idy:N (3.0) BS01 rna ? GO:0000027 ... P62913 37491604
    25 8idy:N (3.0) BS02 rna ? GO:0000027 ... P62913 37491604
    26 8idy:O (3.0) BS01 rna ? GO:0001501 ... P63173 37491604
    27 8idy:P (3.0) BS01 rna ? GO:0002181 ... P62891 37491604
    28 8idy:P (3.0) BS02 rna ? GO:0002181 ... P62891 37491604
    29 8idy:Q (3.0) BS01 rna ? GO:0001824 ... P26373 37491604
    30 8idy:Q (3.0) BS02 rna ? GO:0001824 ... P26373 37491604
    31 8idy:R (3.0) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    32 8idy:R (3.0) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    33 8idy:S (3.0) BS01 rna ? GO:0002181 ... P50914 37491604
    34 8idy:T (3.0) BS01 rna ? N/A Q9UNZ5 37491604
    35 8idy:U (3.0) BS01 rna ? GO:0002181 ... P61313 37491604
    36 8idy:U (3.0) BS02 rna ? GO:0002181 ... P61313 37491604
    37 8idy:V (3.0) BS01 rna ? GO:0002181 ... P40429 37491604
    38 8idy:W (3.0) BS01 rna ? GO:0002181 ... P83881 37491604
    39 8idy:X (3.0) BS01 rna ? GO:0002181 ... P61513 37491604
    40 8idy:Y (3.0) BS01 rna ? GO:0002181 ... P18621 37491604
    41 8idy:Y (3.0) BS02 rna ? GO:0002181 ... P18621 37491604
    42 8idy:Z (3.0) BS01 rna ? GO:0002181 ... Q07020 37491604
    43 8idy:a (3.0) BS01 rna ? GO:0002181 ... P84098 37491604
    44 8idy:b (3.0) BS01 rna ? GO:0002181 ... Q02543 37491604
    45 8idy:b (3.0) BS02 rna ? GO:0002181 ... Q02543 37491604
    46 8idy:c (3.0) BS01 rna ? GO:0002181 ... P46778 37491604
    47 8idy:d (3.0) BS01 rna ? GO:0002181 ... P35268 37491604
    48 8idy:e (3.0) BS01 rna ? GO:0000122 ... P62829 37491604
    49 8idy:g (3.0) BS01 rna ? GO:0000027 ... P62750 37491604
    50 8idy:g (3.0) BS02 rna ? GO:0000027 ... P62750 37491604
    51 8idy:h (3.0) BS01 rna ? GO:0002181 ... P61254 37491604
    52 8idy:h (3.0) BS02 rna ? GO:0002181 ... P61254 37491604
    53 8idy:i (3.0) BS01 rna ? GO:0002181 ... P61353 37491604
    54 8idy:j (3.0) BS01 rna ? GO:0002181 ... P62899 37491604
    55 8idy:k (3.0) BS01 rna ? GO:0002181 ... P62910 37491604
    56 8idy:l (3.0) BS01 rna ? GO:0002181 ... P46779 37491604
    57 8idy:m (3.0) BS01 rna ? GO:0002181 ... P62917 37491604
    58 8idy:n (3.0) BS01 rna ? GO:0000049 ... P18077 37491604
    59 8idy:o (3.0) BS01 rna ? GO:0000027 ... Q02878 37491604
    60 8idy:p (3.0) BS01 rna ? GO:0000463 ... P18124 37491604
    61 8idy:p (3.0) BS02 rna ? GO:0000463 ... P18124 37491604
    62 8idy:r (3.0) BS01 rna ? GO:0000027 ... P46777 37491604
    63 8idy:r (3.0) BS02 rna ? GO:0000027 ... P46777 37491604
    64 8idy:t (3.0) BS01 rna ? GO:0002181 ... P62906 37491604
    65 8idy:u (3.0) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    66 8idy:v (3.0) BS01 rna ? GO:0000460 ... O95478 37491604
    67 8idy:y (3.0) BS01 rna ? GO:0002181 ... P30050 37491604
    68 8idy:z (3.0) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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