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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8idt:4 (2.8) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    2 8idt:4 (2.8) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    3 8idt:4 (2.8) BS03 GTP ? GO:0000079 ... Q9BZE4 37491604
    4 8idt:6 (2.8) BS01 rna ? GO:0000054 ... P56537 37491604
    5 8idt:7 (2.8) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    6 8idt:9 (2.8) BS01 rna ? GO:0003676 ... O00488 37491604
    7 8idt:A (2.8) BS01 rna ? GO:0003723 ... Q13823 37491604
    8 8idt:A (2.8) BS02 GDP ? GO:0003723 ... Q13823 37491604
    9 8idt:B (2.8) BS01 rna ? GO:0002181 ... P39023 37491604
    10 8idt:C (2.8) BS01 rna ? GO:0002181 ... P47914 37491604
    11 8idt:D (2.8) BS01 rna ? GO:0002181 ... P36578 37491604
    12 8idt:D (2.8) BS02 rna ? GO:0002181 ... P36578 37491604
    13 8idt:E (2.8) BS01 rna ? GO:0002181 ... P62888 37491604
    14 8idt:F (2.8) BS01 rna ? GO:0002181 ... P49207 37491604
    15 8idt:G (2.8) BS01 rna ? GO:0000470 ... P62424 37491604
    16 8idt:G (2.8) BS02 rna ? GO:0000470 ... P62424 37491604
    17 8idt:H (2.8) BS01 rna ? GO:0000463 ... P42766 37491604
    18 8idt:H (2.8) BS02 rna ? GO:0000463 ... P42766 37491604
    19 8idt:I (2.8) BS01 rna ? GO:0002181 ... P32969 37491604
    20 8idt:J (2.8) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    21 8idt:K (2.8) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    22 8idt:L (2.8) BS01 rna ? GO:0002181 ... P46776 37491604
    23 8idt:M (2.8) BS01 rna ? GO:0002181 ... P61927 37491604
    24 8idt:M (2.8) BS02 rna ? GO:0002181 ... P61927 37491604
    25 8idt:N (2.8) BS01 rna ? GO:0000027 ... P62913 37491604
    26 8idt:N (2.8) BS02 rna ? GO:0000027 ... P62913 37491604
    27 8idt:O (2.8) BS01 rna ? GO:0001501 ... P63173 37491604
    28 8idt:P (2.8) BS01 rna ? GO:0002181 ... P62891 37491604
    29 8idt:P (2.8) BS02 rna ? GO:0002181 ... P62891 37491604
    30 8idt:Q (2.8) BS01 rna ? GO:0001824 ... P26373 37491604
    31 8idt:Q (2.8) BS02 rna ? GO:0001824 ... P26373 37491604
    32 8idt:R (2.8) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    33 8idt:R (2.8) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    34 8idt:S (2.8) BS01 rna ? GO:0002181 ... P50914 37491604
    35 8idt:T (2.8) BS01 rna ? N/A Q9UNZ5 37491604
    36 8idt:U (2.8) BS01 rna ? GO:0002181 ... P61313 37491604
    37 8idt:U (2.8) BS02 rna ? GO:0002181 ... P61313 37491604
    38 8idt:V (2.8) BS01 rna ? GO:0002181 ... P40429 37491604
    39 8idt:W (2.8) BS01 rna ? GO:0002181 ... P83881 37491604
    40 8idt:X (2.8) BS01 rna ? GO:0002181 ... P61513 37491604
    41 8idt:Y (2.8) BS01 rna ? GO:0002181 ... P18621 37491604
    42 8idt:Y (2.8) BS02 rna ? GO:0002181 ... P18621 37491604
    43 8idt:Z (2.8) BS01 rna ? GO:0002181 ... Q07020 37491604
    44 8idt:a (2.8) BS01 rna ? GO:0002181 ... P84098 37491604
    45 8idt:b (2.8) BS01 rna ? GO:0002181 ... Q02543 37491604
    46 8idt:b (2.8) BS02 rna ? GO:0002181 ... Q02543 37491604
    47 8idt:c (2.8) BS01 rna ? GO:0002181 ... P46778 37491604
    48 8idt:d (2.8) BS01 rna ? GO:0002181 ... P35268 37491604
    49 8idt:e (2.8) BS01 rna ? GO:0000122 ... P62829 37491604
    50 8idt:g (2.8) BS01 rna ? GO:0000027 ... P62750 37491604
    51 8idt:g (2.8) BS02 rna ? GO:0000027 ... P62750 37491604
    52 8idt:h (2.8) BS01 rna ? GO:0002181 ... P61254 37491604
    53 8idt:h (2.8) BS02 rna ? GO:0002181 ... P61254 37491604
    54 8idt:i (2.8) BS01 rna ? GO:0002181 ... P61353 37491604
    55 8idt:j (2.8) BS01 rna ? GO:0002181 ... P62899 37491604
    56 8idt:k (2.8) BS01 rna ? GO:0002181 ... P62910 37491604
    57 8idt:l (2.8) BS01 rna ? GO:0002181 ... P46779 37491604
    58 8idt:m (2.8) BS01 rna ? GO:0002181 ... P62917 37491604
    59 8idt:n (2.8) BS01 rna ? GO:0000049 ... P18077 37491604
    60 8idt:o (2.8) BS01 rna ? GO:0000027 ... Q02878 37491604
    61 8idt:p (2.8) BS01 rna ? GO:0000463 ... P18124 37491604
    62 8idt:p (2.8) BS02 rna ? GO:0000463 ... P18124 37491604
    63 8idt:r (2.8) BS01 rna ? GO:0000027 ... P46777 37491604
    64 8idt:r (2.8) BS02 rna ? GO:0000027 ... P46777 37491604
    65 8idt:y (2.8) BS01 rna ? GO:0002181 ... P30050 37491604
    66 8idt:z (2.8) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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