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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 404 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8i7r:LF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    202 8i7r:LG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    203 8i7r:LH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    204 8i7r:LH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    205 8i7r:LI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    206 8i7r:LJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    207 8i7r:LJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    208 8i7r:LK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    209 8i7r:LL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    210 8i7r:MB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    211 8i7r:MB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    212 8i7r:MC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    213 8i7r:MD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    214 8i7r:MD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    215 8i7r:ME (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    216 8i7r:MF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    217 8i7r:MF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    218 8i7r:MG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    219 8i7r:MH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    220 8i7r:MH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    221 8i7r:MI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    222 8i7r:MJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    223 8i7r:MJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    224 8i7r:MK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    225 8i7r:ML (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    226 8i7r:ML (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    227 8i7r:MM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    228 8i7r:NA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    229 8i7r:NB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    230 8i7r:NB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    231 8i7r:NC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    232 8i7r:ND (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    233 8i7r:ND (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    234 8i7r:NE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    235 8i7r:NF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    236 8i7r:NF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    237 8i7r:NG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    238 8i7r:NH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    239 8i7r:NH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    240 8i7r:NI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    241 8i7r:NJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    242 8i7r:NJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    243 8i7r:NK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    244 8i7r:NL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    245 8i7r:OA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    246 8i7r:OB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    247 8i7r:OB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    248 8i7r:OC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    249 8i7r:OD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    250 8i7r:OD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    251 8i7r:OE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    252 8i7r:OF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    253 8i7r:OF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    254 8i7r:OG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    255 8i7r:OH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    256 8i7r:OH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    257 8i7r:OI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    258 8i7r:OJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    259 8i7r:OJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    260 8i7r:OK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    261 8i7r:OL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    262 8i7r:PA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    263 8i7r:PB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    264 8i7r:PB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    265 8i7r:PC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    266 8i7r:PD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    267 8i7r:PD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    268 8i7r:PE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    269 8i7r:PF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    270 8i7r:PF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    271 8i7r:PG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    272 8i7r:PH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    273 8i7r:PH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    274 8i7r:PI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    275 8i7r:PJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    276 8i7r:PJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    277 8i7r:PK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    278 8i7r:PL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    279 8i7r:PL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    280 8i7r:PM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    281 8i7r:QB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    282 8i7r:QB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    283 8i7r:QC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    284 8i7r:QD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    285 8i7r:QD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    286 8i7r:QE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    287 8i7r:QF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    288 8i7r:QF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    289 8i7r:QG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    290 8i7r:QH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    291 8i7r:QH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    292 8i7r:QI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    293 8i7r:QJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    294 8i7r:QJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    295 8i7r:QK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    296 8i7r:QL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    297 8i7r:QL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    298 8i7r:QM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    299 8i7r:RB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    300 8i7r:RB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    301 8i7r:RC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    302 8i7r:RD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    303 8i7r:RD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    304 8i7r:RE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    305 8i7r:RF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    306 8i7r:RF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    307 8i7r:RG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    308 8i7r:RH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    309 8i7r:RH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    310 8i7r:RI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    311 8i7r:RJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    312 8i7r:RJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    313 8i7r:RK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    314 8i7r:RL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    315 8i7r:RL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    316 8i7r:RM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    317 8i7r:SB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    318 8i7r:SB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    319 8i7r:SC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    320 8i7r:SD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    321 8i7r:SD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    322 8i7r:SE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    323 8i7r:SF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    324 8i7r:SF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    325 8i7r:SG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    326 8i7r:SH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    327 8i7r:SH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    328 8i7r:SI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    329 8i7r:SJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    330 8i7r:SJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    331 8i7r:SK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    332 8i7r:SL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    333 8i7r:SL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    334 8i7r:SM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    335 8i7r:TB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    336 8i7r:TB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    337 8i7r:TC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    338 8i7r:TD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    339 8i7r:TD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    340 8i7r:TE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    341 8i7r:TF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    342 8i7r:TF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    343 8i7r:TG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    344 8i7r:TH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    345 8i7r:TH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    346 8i7r:TI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    347 8i7r:TJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    348 8i7r:TJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    349 8i7r:TK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    350 8i7r:TL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    351 8i7r:TL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    352 8i7r:TM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    353 8i7r:TN (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    354 8i7r:UA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    355 8i7r:UB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    356 8i7r:UB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    357 8i7r:UC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    358 8i7r:UD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    359 8i7r:UD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    360 8i7r:UE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    361 8i7r:UF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    362 8i7r:UF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    363 8i7r:UG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    364 8i7r:UH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    365 8i7r:UH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    366 8i7r:UI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    367 8i7r:UJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    368 8i7r:UJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    369 8i7r:UK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    370 8i7r:UL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    371 8i7r:VA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    372 8i7r:VB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    373 8i7r:VB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    374 8i7r:VC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    375 8i7r:VD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    376 8i7r:VD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    377 8i7r:VE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    378 8i7r:VF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    379 8i7r:VF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    380 8i7r:VG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    381 8i7r:VH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    382 8i7r:VH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    383 8i7r:VI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    384 8i7r:VJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    385 8i7r:VJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    386 8i7r:VK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    387 8i7r:VL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    388 8i7r:WA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    389 8i7r:WB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    390 8i7r:WB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    391 8i7r:WC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    392 8i7r:WD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    393 8i7r:WD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    394 8i7r:WE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    395 8i7r:WF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    396 8i7r:WF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    397 8i7r:WG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    398 8i7r:WH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    399 8i7r:WH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    400 8i7r:WI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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