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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8i05:A (2.09) BS01 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    2 8i05:A (2.09) BS02 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    3 8i05:A (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    4 8i05:A (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    5 8i05:A (2.09) BS05 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    6 8i05:A (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    7 8i05:B (2.09) BS01 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    8 8i05:B (2.09) BS02 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    9 8i05:B (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    10 8i05:B (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    11 8i05:B (2.09) BS05 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    12 8i05:B (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    13 8i05:C (2.09) BS01 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    14 8i05:C (2.09) BS02 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    15 8i05:C (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    16 8i05:C (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    17 8i05:C (2.09) BS05 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    18 8i05:C (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    19 8i05:C (2.09) BS07 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    20 8i05:D (2.09) BS01 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    21 8i05:D (2.09) BS02 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    22 8i05:D (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    23 8i05:D (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    24 8i05:D (2.09) BS05 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    25 8i05:D (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    26 8i05:D (2.09) BS07 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    27 8i05:E (2.09) BS01 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    28 8i05:E (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    29 8i05:E (2.09) BS03 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    30 8i05:E (2.09) BS04 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    31 8i05:E (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    32 8i05:E (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    33 8i05:F (2.09) BS01 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    34 8i05:F (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    35 8i05:F (2.09) BS03 FAD 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    36 8i05:F (2.09) BS04 TPP 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    37 8i05:F (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    38 8i05:F (2.09) BS06 UQ0 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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