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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8gxq:BA (5.04) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 36201575
    2 8gxq:BA (5.04) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 36201575
    3 8gxq:BA (5.04) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 36201575
    4 8gxq:DP (5.04) BS01 dna ? GO:0000785 ... P20226 36201575
    5 8gxq:DP (5.04) BS02 dna ? GO:0000785 ... P20226 36201575
    6 8gxq:DQ (5.04) BS01 dna ? GO:0000979 ... P52655 36201575
    7 8gxq:EA (5.04) BS01 ZN ? GO:0001113 ... P29083 36201575
    8 8gxq:FB (5.04) BS01 dna 3.6.4.12 GO:0003677 ... P13984 36201575
    9 8gxq:FB (5.04) BS02 dna 3.6.4.12 GO:0003677 ... P13984 36201575
    10 8gxq:HA (5.04) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 36201575
    11 8gxq:HD (5.04) BS01 ZN ? GO:0000082 ... P51948 36201575
    12 8gxq:HE (5.04) BS01 ZN ? GO:0000438 ... Q13889 36201575
    13 8gxq:HE (5.04) BS02 ZN ? GO:0000438 ... Q13889 36201575
    14 8gxq:HG (5.04) BS01 ZN ? GO:0000438 ... Q13888 36201575
    15 8gxq:HG (5.04) BS02 ZN ? GO:0000438 ... Q13888 36201575
    16 8gxq:HG (5.04) BS03 ZN ? GO:0000438 ... Q13888 36201575
    17 8gxq:HH (5.04) BS01 dna 5.6.2.4 GO:0000112 ... P19447 36201575
    18 8gxq:HH (5.04) BS02 dna 5.6.2.4 GO:0000112 ... P19447 36201575
    19 8gxq:NA (5.04) BS01 dna ? GO:0000786 ... A0A310TTQ1 36201575
    20 8gxq:NA (5.04) BS02 dna ? GO:0000786 ... A0A310TTQ1 36201575
    21 8gxq:NB (5.04) BS01 dna ? GO:0000786 ... P62799 36201575
    22 8gxq:NC (5.04) BS01 dna N/A GO:0000786 ... N/A 36201575
    23 8gxq:NC (5.04) BS02 dna N/A GO:0000786 ... N/A 36201575
    24 8gxq:ND (5.04) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    25 8gxq:ND (5.04) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    26 8gxq:NE (5.04) BS01 dna ? GO:0000786 ... A0A310TTQ1 36201575
    27 8gxq:NE (5.04) BS02 dna ? GO:0000786 ... A0A310TTQ1 36201575
    28 8gxq:NF (5.04) BS01 dna ? GO:0000786 ... P62799 36201575
    29 8gxq:NG (5.04) BS01 dna N/A GO:0000786 ... N/A 36201575
    30 8gxq:NG (5.04) BS02 dna N/A GO:0000786 ... N/A 36201575
    31 8gxq:NH (5.04) BS01 dna ? GO:0000786 ... A0A8J0U496 36201575
    32 8gxq:NH (5.04) BS02 dna ? GO:0000786 ... A0A8J0U496 36201575
    33 8gxq:PA (5.04) BS01 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36201575
    34 8gxq:PA (5.04) BS02 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36201575
    35 8gxq:PA (5.04) BS03 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36201575
    36 8gxq:PB (5.04) BS01 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 36201575
    37 8gxq:PC (5.04) BS01 ZN ? GO:0000428 ... I3LCH3 36201575
    38 8gxq:PE (5.04) BS01 dna ? GO:0003677 ... A0A4X1VTX4 36201575
    39 8gxq:PI (5.04) BS01 ZN ? GO:0000428 ... P60899 36201575
    40 8gxq:PI (5.04) BS02 ZN ? GO:0000428 ... P60899 36201575
    41 8gxq:PJ (5.04) BS01 ZN ? GO:0000428 ... A0A493TD97 36201575
    42 8gxq:PL (5.04) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 36201575
    43 8gxq:c (5.04) BS01 ZN ? GO:0000151 ... Q6P2C8 36201575
    44 8gxq:p (5.04) BS01 ZN ? GO:0003713 ... Q9Y2X0 36201575
    45 8gxq:s (5.04) BS01 dna ? GO:0003712 ... A0JLT2 36201575
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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