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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 382 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8g2z:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    202 8g2z:MG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    203 8g2z:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    204 8g2z:MI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    205 8g2z:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    206 8g2z:MK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    207 8g2z:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    208 8g2z:MM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    209 8g2z:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    210 8g2z:NA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    211 8g2z:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    212 8g2z:NC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    213 8g2z:ND (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    214 8g2z:NE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    215 8g2z:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    216 8g2z:NG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    217 8g2z:NH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    218 8g2z:NI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    219 8g2z:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    220 8g2z:NK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    221 8g2z:NL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    222 8g2z:NM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    223 8g2z:NM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    224 8g2z:NN (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    225 8g2z:NN (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    226 8g2z:OA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    227 8g2z:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    228 8g2z:OB (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    229 8g2z:OB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    230 8g2z:OC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    231 8g2z:OC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    232 8g2z:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    233 8g2z:OE (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    234 8g2z:OE (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    235 8g2z:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    236 8g2z:OG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    237 8g2z:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    238 8g2z:OI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    239 8g2z:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    240 8g2z:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    241 8g2z:OK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    242 8g2z:OL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    243 8g2z:OM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    244 8g2z:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    245 8g2z:PA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    246 8g2z:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    247 8g2z:PC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    248 8g2z:PC (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    249 8g2z:PD (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    250 8g2z:PD (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    251 8g2z:PE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    252 8g2z:PE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    253 8g2z:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    254 8g2z:PG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    255 8g2z:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    256 8g2z:PI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    257 8g2z:PI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    258 8g2z:PJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    259 8g2z:PK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    260 8g2z:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    261 8g2z:PM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    262 8g2z:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    263 8g2z:QA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    264 8g2z:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    265 8g2z:QC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    266 8g2z:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    267 8g2z:QD (4.1) BS02 GTP ? GO:0000226 ... P41352 37061538
    268 8g2z:QE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    269 8g2z:QE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    270 8g2z:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    271 8g2z:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    272 8g2z:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    273 8g2z:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    274 8g2z:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    275 8g2z:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    276 8g2z:QK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    277 8g2z:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    278 8g2z:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    279 8g2z:QM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    280 8g2z:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    281 8g2z:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    282 8g2z:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    283 8g2z:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    284 8g2z:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    285 8g2z:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    286 8g2z:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    287 8g2z:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    288 8g2z:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    289 8g2z:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    290 8g2z:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    291 8g2z:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    292 8g2z:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    293 8g2z:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    294 8g2z:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    295 8g2z:SA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    296 8g2z:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    297 8g2z:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    298 8g2z:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    299 8g2z:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    300 8g2z:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    301 8g2z:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    302 8g2z:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    303 8g2z:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    304 8g2z:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    305 8g2z:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    306 8g2z:SK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    307 8g2z:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    308 8g2z:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    309 8g2z:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    310 8g2z:TA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    311 8g2z:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    312 8g2z:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    313 8g2z:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    314 8g2z:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    315 8g2z:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    316 8g2z:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    317 8g2z:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    318 8g2z:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    319 8g2z:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    320 8g2z:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    321 8g2z:TK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    322 8g2z:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    323 8g2z:TL (4.1) BS02 GTP ? GO:0000226 ... P41352 37061538
    324 8g2z:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    325 8g2z:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    326 8g2z:UA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    327 8g2z:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    328 8g2z:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    329 8g2z:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    330 8g2z:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    331 8g2z:UE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    332 8g2z:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    333 8g2z:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    334 8g2z:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    335 8g2z:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    336 8g2z:UI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    337 8g2z:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    338 8g2z:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    339 8g2z:UK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    340 8g2z:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    341 8g2z:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    342 8g2z:UM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    343 8g2z:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    344 8g2z:VA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    345 8g2z:VA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    346 8g2z:VB (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    347 8g2z:VB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    348 8g2z:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    349 8g2z:VD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    350 8g2z:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    351 8g2z:VE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    352 8g2z:VF (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    353 8g2z:VF (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    354 8g2z:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    355 8g2z:VG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    356 8g2z:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    357 8g2z:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    358 8g2z:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    359 8g2z:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    360 8g2z:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    361 8g2z:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    362 8g2z:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    363 8g2z:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    364 8g2z:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    365 8g2z:WA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    366 8g2z:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    367 8g2z:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    368 8g2z:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    369 8g2z:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    370 8g2z:WE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    371 8g2z:WF (4.1) BS01 GTP ? GO:0000226 ... P41352 37061538
    372 8g2z:WF (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    373 8g2z:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    374 8g2z:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    375 8g2z:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    376 8g2z:WI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    377 8g2z:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    378 8g2z:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    379 8g2z:WK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    380 8g2z:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    381 8g2z:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 37061538
    382 8g2z:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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