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BioLiP
Download all results in tab-seperated text for 264 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8g2d:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38238495
    202 8g2d:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38238495
    203 8g2d:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38238495
    204 8g2d:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38238495
    205 8g2d:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38238495
    206 8g2d:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38238495
    207 8g2d:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38238495
    208 8g2d:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38238495
    209 8g2d:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38238495
    210 8g2d:2Q (2.7) BS03 rna ? GO:0000049 ... P60489 38238495
    211 8g2d:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    212 8g2d:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    213 8g2d:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38238495
    214 8g2d:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38238495
    215 8g2d:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38238495
    216 8g2d:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38238495
    217 8g2d:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38238495
    218 8g2d:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38238495
    219 8g2d:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    220 8g2d:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38238495
    221 8g2d:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    222 8g2d:2V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    223 8g2d:2V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    224 8g2d:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38238495
    225 8g2d:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    226 8g2d:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38238495
    227 8g2d:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    228 8g2d:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38238495
    229 8g2d:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    230 8g2d:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38238495
    231 8g2d:2Z (2.7) BS02 MG ? GO:0003723 ... Q5SHZ1 38238495
    232 8g2d:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38238495
    233 8g2d:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38238495
    234 8g2d:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38238495
    235 8g2d:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38238495
    236 8g2d:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38238495
    237 8g2d:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38238495
    238 8g2d:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    239 8g2d:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38238495
    240 8g2d:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    241 8g2d:2g (2.7) BS01 rna ? GO:0000028 ... P17291 38238495
    242 8g2d:2g (2.7) BS02 rna ? GO:0000028 ... P17291 38238495
    243 8g2d:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38238495
    244 8g2d:2i (2.7) BS01 rna ? GO:0000049 ... P80374 38238495
    245 8g2d:2i (2.7) BS02 rna ? GO:0000049 ... P80374 38238495
    246 8g2d:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38238495
    247 8g2d:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38238495
    248 8g2d:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    249 8g2d:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38238495
    250 8g2d:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    251 8g2d:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38238495
    252 8g2d:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38238495
    253 8g2d:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    254 8g2d:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38238495
    255 8g2d:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38238495
    256 8g2d:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38238495
    257 8g2d:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38238495
    258 8g2d:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    259 8g2d:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    260 8g2d:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38238495
    261 8g2d:2r (2.7) BS02 MG ? GO:0003735 ... Q5SLQ0 38238495
    262 8g2d:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38238495
    263 8g2d:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38238495
    264 8g2d:2t (2.7) BS02 MG ? GO:0003723 ... P80380 38238495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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