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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fl0:BA (2.91) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fl0:L5 (2.91) BS01 rna ? GO:0000027 ... P62913 37410842
    3 8fl0:L5 (2.91) BS02 rna ? GO:0000027 ... P62913 37410842
    4 8fl0:L7 (2.91) BS01 rna ? GO:0002181 ... P40429 37410842
    5 8fl0:L8 (2.91) BS01 rna ? GO:0002181 ... P50914 37410842
    6 8fl0:LB (2.91) BS01 rna ? GO:0002181 ... Q07020 37410842
    7 8fl0:LC (2.91) BS01 rna ? GO:0002181 ... Q02543 37410842
    8 8fl0:LE (2.91) BS01 rna ? GO:0002181 ... P46778 37410842
    9 8fl0:LG (2.91) BS01 rna ? GO:0000122 ... P62829 37410842
    10 8fl0:LL (2.91) BS01 rna ? GO:0002181 ... P46779 37410842
    11 8fl0:LN (2.91) BS01 rna ? GO:0002181 ... P39023 37410842
    12 8fl0:LQ (2.91) BS01 rna ? GO:0002181 ... P62910 37410842
    13 8fl0:LT (2.91) BS01 rna ? GO:0000049 ... P18077 37410842
    14 8fl0:LT (2.91) BS02 MG ? GO:0000049 ... P18077 37410842
    15 8fl0:NB (2.91) BS01 rna ? GO:0003723 ... Q9BVP2 37410842
    16 8fl0:NC (2.91) BS01 rna ? GO:0003723 ... Q13823 37410842
    17 8fl0:NC (2.91) BS02 GTP ? GO:0003723 ... Q13823 37410842
    18 8fl0:NC (2.91) BS03 MG ? GO:0003723 ... Q13823 37410842
    19 8fl0:ND (2.91) BS01 rna ? GO:0000027 ... Q9H7B2 37410842
    20 8fl0:ND (2.91) BS02 rna ? GO:0000027 ... Q9H7B2 37410842
    21 8fl0:NF (2.91) BS01 rna ? GO:0000460 ... O95478 37410842
    22 8fl0:NK (2.91) BS01 rna ? GO:0001099 ... Q9BRT6 37410842
    23 8fl0:NZ (2.91) BS01 rna ? GO:0003723 ... Q9H6F5 37410842
    24 8fl0:SA (2.91) BS01 rna ? GO:0002181 ... P36578 37410842
    25 8fl0:SB (2.91) BS01 rna ? GO:0000027 ... P46777 37410842
    26 8fl0:SB (2.91) BS02 rna ? GO:0000027 ... P46777 37410842
    27 8fl0:SC (2.91) BS01 rna ? GO:0000027 ... Q02878 37410842
    28 8fl0:SD (2.91) BS01 rna ? GO:0000463 ... P18124 37410842
    29 8fl0:SG (2.91) BS01 rna ? GO:0002181 ... P32969 37410842
    30 8fl0:SK (2.91) BS01 rna ? GO:0000054 ... P56537 37410842
    31 8fl0:SQ (2.91) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    32 8fl0:SR (2.91) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    33 8fl0:SR (2.91) BS02 GDP ? GO:0000079 ... Q9BZE4 37410842
    34 8fl0:SR (2.91) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    35 8fl0:ST (2.91) BS01 rna ? GO:0000027 ... Q15050 37410842
    36 8fl0:SV (2.91) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    37 8fl0:SV (2.91) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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