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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cgu:D (1.89) BS01 rna ? GO:0000028 ... P0A7V8 37550453
    2 8cgu:E (1.89) BS01 rna ? GO:0000028 ... P0A7W1 37550453
    3 8cgu:F (1.89) BS01 rna ? GO:0002181 ... P02358 37550453
    4 8cgu:H (1.89) BS01 rna ? GO:0000028 ... P0A7W7 37550453
    5 8cgu:K (1.89) BS01 rna ? GO:0002181 ... P0A7R9 37550453
    6 8cgu:L (1.89) BS01 rna ? GO:0000049 ... P0A7S3 37550453
    7 8cgu:O (1.89) BS01 rna ? GO:0000028 ... P0ADZ4 37550453
    8 8cgu:P (1.89) BS01 rna ? GO:0000028 ... P0A7T3 37550453
    9 8cgu:Q (1.89) BS01 rna ? GO:0000028 ... P0AG63 37550453
    10 8cgu:R (1.89) BS01 rna ? GO:0002181 ... P0A7T7 37550453
    11 8cgu:T (1.89) BS01 rna ? GO:0000028 ... P0A7U7 37550453
    12 8cgu:U (1.89) BS01 rna ? GO:0000028 ... P68679 37550453
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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