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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ced:C (4.15) BS01 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    2 8ced:C (4.15) BS02 rna 3.1.13.1 GO:0003676 ... O32231 38326618
    3 8ced:D (4.15) BS01 rna ? GO:0003735 ... P21464 38326618
    4 8ced:E (4.15) BS01 rna ? GO:0003676 ... P21465 38326618
    5 8ced:F (4.15) BS01 rna ? GO:0003723 ... P21466 38326618
    6 8ced:G (4.15) BS01 rna ? GO:0003723 ... P21467 38326618
    7 8ced:H (4.15) BS01 rna ? GO:0000028 ... P21469 38326618
    8 8ced:I (4.15) BS01 rna ? GO:0003735 ... P12879 38326618
    9 8ced:J (4.15) BS01 rna ? GO:0003723 ... P21470 38326618
    10 8ced:K (4.15) BS01 rna ? GO:0000049 ... P21471 38326618
    11 8ced:L (4.15) BS01 rna ? GO:0000049 ... P21472 38326618
    12 8ced:M (4.15) BS01 rna ? GO:0000049 ... P20282 38326618
    13 8ced:N (4.15) BS01 rna ? GO:0003735 ... P12878 38326618
    14 8ced:O (4.15) BS01 rna ? GO:0003735 ... P21473 38326618
    15 8ced:P (4.15) BS01 rna ? GO:0003735 ... P21474 38326618
    16 8ced:Q (4.15) BS01 rna ? GO:0003735 ... P12874 38326618
    17 8ced:R (4.15) BS01 rna ? GO:0000028 ... P21476 38326618
    18 8ced:S (4.15) BS01 rna ? GO:0003723 ... P21477 38326618
    19 8ced:T (4.15) BS01 rna ? GO:0003735 ... P21468 38326618
    20 8ced:U (4.15) BS01 rna ? GO:0003735 ... P21475 38326618
    21 8ced:V (4.15) BS01 rna ? GO:0003735 ... P04969 38326618
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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