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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bqx:A (3.8) BS01 rna ? GO:0000054 ... P05750 37079644
    2 8bqx:AA (3.8) BS01 rna ? GO:0000470 ... P17076 37079644
    3 8bqx:AA (3.8) BS02 rna ? GO:0000470 ... P17076 37079644
    4 8bqx:AB (3.8) BS01 rna ? GO:0002181 ... P0CX41 37079644
    5 8bqx:AB (3.8) BS02 rna ? GO:0002181 ... P0CX41 37079644
    6 8bqx:AC (3.8) BS01 rna ? GO:0002181 ... P05745 37079644
    7 8bqx:AD (3.8) BS01 rna ? GO:0002181 ... P05738 37079644
    8 8bqx:AE (3.8) BS01 rna ? N/A P04449 37079644
    9 8bqx:AE (3.8) BS02 rna ? N/A P04449 37079644
    10 8bqx:AF (3.8) BS01 rna ? GO:0000448 ... P49166 37079644
    11 8bqx:AF (3.8) BS02 rna ? GO:0000448 ... P49166 37079644
    12 8bqx:AF (3.8) BS03 ZN ? GO:0000448 ... P49166 37079644
    13 8bqx:AG (3.8) BS01 rna ? GO:0000027 ... P0C0W9 37079644
    14 8bqx:AG (3.8) BS02 rna ? GO:0000027 ... P0C0W9 37079644
    15 8bqx:AH (3.8) BS01 rna ? GO:0003735 ... P04456 37079644
    16 8bqx:AH (3.8) BS02 rna ? GO:0003735 ... P04456 37079644
    17 8bqx:AI (3.8) BS01 rna ? GO:0002181 ... P49167 37079644
    18 8bqx:AJ (3.8) BS01 rna ? GO:0002181 ... Q12690 37079644
    19 8bqx:AJ (3.8) BS02 rna ? GO:0002181 ... Q12690 37079644
    20 8bqx:AK (3.8) BS01 rna ? GO:0002181 ... P05743 37079644
    21 8bqx:AK (3.8) BS02 rna ? GO:0002181 ... P05743 37079644
    22 8bqx:AL (3.8) BS01 rna ? GO:0002181 ... P04650 37079644
    23 8bqx:AL (3.8) BS02 rna ? GO:0002181 ... P04650 37079644
    24 8bqx:AM (3.8) BS01 rna ? GO:0000027 ... P36105 37079644
    25 8bqx:AN (3.8) BS01 rna ? GO:0002181 ... P0C2H6 37079644
    26 8bqx:AO (3.8) BS01 rna ? GO:0003735 ... P0CH08 37079644
    27 8bqx:AO (3.8) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    28 8bqx:AP (3.8) BS01 rna ? GO:0002181 ... P0CX27 37079644
    29 8bqx:AP (3.8) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    30 8bqx:AQ (3.8) BS01 rna ? GO:0002181 ... P05748 37079644
    31 8bqx:AQ (3.8) BS02 rna ? GO:0002181 ... P05748 37079644
    32 8bqx:AR (3.8) BS01 rna ? GO:0002181 ... P02406 37079644
    33 8bqx:AT (3.8) BS01 rna ? GO:0002181 ... P0CX25 37079644
    34 8bqx:AT (3.8) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    35 8bqx:AU (3.8) BS01 rna ? GO:0000470 ... P26784 37079644
    36 8bqx:AV (3.8) BS01 rna ? GO:0002181 ... P05747 37079644
    37 8bqx:AW (3.8) BS01 rna ? GO:0002181 ... P0CX45 37079644
    38 8bqx:AX (3.8) BS01 rna ? GO:0000448 ... P05740 37079644
    39 8bqx:AX (3.8) BS02 rna ? GO:0000448 ... P05740 37079644
    40 8bqx:AY (3.8) BS01 rna ? GO:0002181 ... P14120 37079644
    41 8bqx:B (3.8) BS01 rna ? GO:0000028 ... P26783 37079644
    42 8bqx:BA (3.8) BS01 rna ? GO:0000027 ... P14126 37079644
    43 8bqx:BB (3.8) BS01 rna ? GO:0002181 ... P0CX49 37079644
    44 8bqx:BC (3.8) BS01 rna ? GO:0002181 ... P0C2H8 37079644
    45 8bqx:BD (3.8) BS01 rna ? GO:0000027 ... P41805 37079644
    46 8bqx:BD (3.8) BS02 rna ? GO:0000027 ... P41805 37079644
    47 8bqx:BE (3.8) BS01 rna ? GO:0002181 ... P10664 37079644
    48 8bqx:BE (3.8) BS02 rna ? GO:0002181 ... P10664 37079644
    49 8bqx:BF (3.8) BS01 rna ? GO:0002181 ... P0CX82 37079644
    50 8bqx:BF (3.8) BS02 rna ? GO:0002181 ... P0CX82 37079644
    51 8bqx:BG (3.8) BS01 rna ? GO:0002181 ... P38061 37079644
    52 8bqx:BH (3.8) BS01 rna ? GO:0002181 ... P0CX23 37079644
    53 8bqx:BH (3.8) BS02 rna ? GO:0002181 ... P0CX23 37079644
    54 8bqx:BI (3.8) BS01 rna ? GO:0000027 ... P26321 37079644
    55 8bqx:BI (3.8) BS02 rna ? GO:0000027 ... P26321 37079644
    56 8bqx:BJ (3.8) BS01 rna ? GO:0002181 ... Q02753 37079644
    57 8bqx:BJ (3.8) BS02 rna ? GO:0002181 ... Q02753 37079644
    58 8bqx:BK (3.8) BS01 rna ? GO:0000027 ... P05744 37079644
    59 8bqx:BL (3.8) BS01 rna ? GO:0003735 ... P05749 37079644
    60 8bqx:BM (3.8) BS01 rna ? GO:0000027 ... P05739 37079644
    61 8bqx:BN (3.8) BS01 rna ? GO:0002181 ... P87262 37079644
    62 8bqx:BN (3.8) BS02 ZN ? GO:0002181 ... P87262 37079644
    63 8bqx:BO (3.8) BS01 rna ? GO:0000463 ... P05737 37079644
    64 8bqx:BO (3.8) BS02 rna ? GO:0000463 ... P05737 37079644
    65 8bqx:BP (3.8) BS01 rna ? GO:0000463 ... P0CX84 37079644
    66 8bqx:BP (3.8) BS02 rna ? GO:0000463 ... P0CX84 37079644
    67 8bqx:BT (3.8) BS01 rna ? GO:0000055 ... P0CX43 37079644
    68 8bqx:C (3.8) BS01 rna ? N/A Q08745 37079644
    69 8bqx:D (3.8) BS01 rna ? GO:0003735 ... P48589 37079644
    70 8bqx:E (3.8) BS01 rna ? GO:0000028 ... Q01855 37079644
    71 8bqx:F (3.8) BS01 rna ? GO:0000462 ... P0CX51 37079644
    72 8bqx:G (3.8) BS01 rna ? GO:0000028 ... P02407 37079644
    73 8bqx:H (3.8) BS01 rna ? GO:0000054 ... P0CX55 37079644
    74 8bqx:I (3.8) BS01 rna ? GO:0000028 ... P07280 37079644
    75 8bqx:J (3.8) BS01 rna ? GO:0003723 ... P38701 37079644
    76 8bqx:K (3.8) BS01 rna ? N/A Q3E792 37079644
    77 8bqx:L (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 37079644
    78 8bqx:M (3.8) BS01 rna ? GO:0002181 ... P41057 37079644
    79 8bqx:M (3.8) BS02 ZN ? GO:0002181 ... P41057 37079644
    80 8bqx:N (3.8) BS01 rna ? GO:0003735 ... P05759 37079644
    81 8bqx:N (3.8) BS02 ZN ? GO:0003735 ... P05759 37079644
    82 8bqx:O (3.8) BS01 rna ? GO:0001965 ... P38011 37079644
    83 8bqx:P (3.8) BS01 rna ? GO:0003735 ... P32905 37079644
    84 8bqx:Q (3.8) BS01 rna ? GO:0000462 ... P33442 37079644
    85 8bqx:R (3.8) BS01 rna ? GO:0003723 ... P25443 37079644
    86 8bqx:S (3.8) BS01 rna ? GO:0002181 ... P0CX35 37079644
    87 8bqx:T (3.8) BS01 rna ? GO:0000462 ... P0CX37 37079644
    88 8bqx:U (3.8) BS01 rna ? GO:0002181 ... P26786 37079644
    89 8bqx:V (3.8) BS01 rna ? GO:0000462 ... P0CX39 37079644
    90 8bqx:V (3.8) BS02 rna ? GO:0000462 ... P0CX39 37079644
    91 8bqx:W (3.8) BS01 rna ? GO:0000462 ... O13516 37079644
    92 8bqx:X (3.8) BS01 rna ? GO:0000028 ... P0CX47 37079644
    93 8bqx:Y (3.8) BS01 rna ? GO:0000462 ... P05756 37079644
    94 8bqx:Y (3.8) BS02 rna ? GO:0000462 ... P05756 37079644
    95 8bqx:Z (3.8) BS01 rna ? GO:0000028 ... P06367 37079644
    96 8bqx:a (3.8) BS01 rna ? GO:0000447 ... P0C0V8 37079644
    97 8bqx:b (3.8) BS01 rna ? GO:0002181 ... P0C0W1 37079644
    98 8bqx:c (3.8) BS01 rna ? GO:0000462 ... P0CX29 37079644
    99 8bqx:d (3.8) BS01 rna ? GO:0000462 ... P0CX31 37079644
    100 8bqx:e (3.8) BS01 rna ? GO:0003735 ... P39939 37079644
    101 8bqx:f (3.8) BS01 rna ? GO:0000028 ... P35997 37079644
    102 8bqx:g (3.8) BS01 rna ? GO:0002181 ... P0CX33 37079644
    103 8bqx:x (3.8) BS01 rna 3.4.11.18 GO:0003729 ... Q01662 37079644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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