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BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bcw:A (2.11) BS01 CL0 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    2 8bcw:A (2.11) BS02 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    3 8bcw:A (2.11) BS03 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    4 8bcw:A (2.11) BS04 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    5 8bcw:A (2.11) BS05 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    6 8bcw:A (2.11) BS06 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    7 8bcw:A (2.11) BS07 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    8 8bcw:A (2.11) BS08 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    9 8bcw:A (2.11) BS09 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    10 8bcw:A (2.11) BS10 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    11 8bcw:A (2.11) BS11 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    12 8bcw:A (2.11) BS12 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    13 8bcw:A (2.11) BS13 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    14 8bcw:A (2.11) BS14 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    15 8bcw:A (2.11) BS15 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    16 8bcw:A (2.11) BS16 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    17 8bcw:A (2.11) BS17 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    18 8bcw:A (2.11) BS18 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    19 8bcw:A (2.11) BS19 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    20 8bcw:A (2.11) BS20 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    21 8bcw:A (2.11) BS21 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    22 8bcw:A (2.11) BS22 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    23 8bcw:A (2.11) BS23 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    24 8bcw:A (2.11) BS24 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    25 8bcw:A (2.11) BS25 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    26 8bcw:A (2.11) BS26 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    27 8bcw:A (2.11) BS27 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    28 8bcw:A (2.11) BS28 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    29 8bcw:A (2.11) BS29 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    30 8bcw:A (2.11) BS30 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    31 8bcw:A (2.11) BS31 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    32 8bcw:A (2.11) BS32 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    33 8bcw:A (2.11) BS33 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    34 8bcw:A (2.11) BS34 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    35 8bcw:A (2.11) BS35 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    36 8bcw:A (2.11) BS36 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    37 8bcw:A (2.11) BS37 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    38 8bcw:A (2.11) BS38 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    39 8bcw:A (2.11) BS39 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    40 8bcw:A (2.11) BS40 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    41 8bcw:A (2.11) BS41 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    42 8bcw:A (2.11) BS42 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    43 8bcw:A (2.11) BS43 PQN 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    44 8bcw:A (2.11) BS44 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    45 8bcw:A (2.11) BS45 SF4 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    46 8bcw:A (2.11) BS46 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    47 8bcw:A (2.11) BS47 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    48 8bcw:A (2.11) BS48 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    49 8bcw:A (2.11) BS49 CLA 1.97.1.12 GO:0000287 ... A0A3G1AUL2 N/A
    50 8bcw:B (2.11) BS01 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    51 8bcw:B (2.11) BS02 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    52 8bcw:B (2.11) BS03 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    53 8bcw:B (2.11) BS04 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    54 8bcw:B (2.11) BS05 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    55 8bcw:B (2.11) BS06 SF4 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    56 8bcw:B (2.11) BS07 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    57 8bcw:B (2.11) BS08 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    58 8bcw:B (2.11) BS09 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    59 8bcw:B (2.11) BS10 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    60 8bcw:B (2.11) BS11 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    61 8bcw:B (2.11) BS12 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    62 8bcw:B (2.11) BS13 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    63 8bcw:B (2.11) BS14 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    64 8bcw:B (2.11) BS15 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    65 8bcw:B (2.11) BS16 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    66 8bcw:B (2.11) BS17 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    67 8bcw:B (2.11) BS18 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    68 8bcw:B (2.11) BS19 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    69 8bcw:B (2.11) BS20 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    70 8bcw:B (2.11) BS21 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    71 8bcw:B (2.11) BS22 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    72 8bcw:B (2.11) BS23 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    73 8bcw:B (2.11) BS24 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    74 8bcw:B (2.11) BS25 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    75 8bcw:B (2.11) BS26 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    76 8bcw:B (2.11) BS27 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    77 8bcw:B (2.11) BS28 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    78 8bcw:B (2.11) BS29 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    79 8bcw:B (2.11) BS30 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    80 8bcw:B (2.11) BS31 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    81 8bcw:B (2.11) BS32 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    82 8bcw:B (2.11) BS33 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    83 8bcw:B (2.11) BS34 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    84 8bcw:B (2.11) BS35 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    85 8bcw:B (2.11) BS36 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    86 8bcw:B (2.11) BS37 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    87 8bcw:B (2.11) BS38 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    88 8bcw:B (2.11) BS39 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    89 8bcw:B (2.11) BS40 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    90 8bcw:B (2.11) BS41 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    91 8bcw:B (2.11) BS42 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    92 8bcw:B (2.11) BS43 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    93 8bcw:B (2.11) BS44 CLA 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    94 8bcw:B (2.11) BS45 PQN 1.97.1.12 GO:0000287 ... A0A3G1AZK6 N/A
    95 8bcw:C (2.11) BS01 SF4 1.97.1.12 GO:0009055 ... A0A3G1ATU7 N/A
    96 8bcw:C (2.11) BS02 SF4 1.97.1.12 GO:0009055 ... A0A3G1ATU7 N/A
    97 8bcw:H (2.11) BS01 CL0 N/A GO:0009522 ... N/A N/A
    98 8bcw:H (2.11) BS02 CLA N/A GO:0009522 ... N/A N/A
    99 8bcw:I (2.11) BS01 CLA ? GO:0009507 ... A0A3G1AZM6 N/A
    100 8bcw:L (2.11) BS01 CLA N/A GO:0009522 ... N/A N/A
    101 8bcw:L (2.11) BS02 CLA N/A GO:0009522 ... N/A N/A
    102 8bcw:L (2.11) BS03 CLA N/A GO:0009522 ... N/A N/A
    103 8bcw:L (2.11) BS04 CLA N/A GO:0009522 ... N/A N/A
    104 8bcw:L (2.11) BS05 CLA N/A GO:0009522 ... N/A N/A
    105 8bcw:L (2.11) BS06 CLA N/A GO:0009522 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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