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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8b6c:A (2.79) BS01 rna ? GO:0002181 ... G1TT27 36867692
    2 8b6c:A (2.79) BS02 MG ? GO:0002181 ... G1TT27 36867692
    3 8b6c:B (2.79) BS01 rna ? GO:0003723 ... G1TL06 36867692
    4 8b6c:C (2.79) BS01 rna ? GO:0003735 ... G1SVW5 36867692
    5 8b6c:C (2.79) BS02 rna ? GO:0003735 ... G1SVW5 36867692
    6 8b6c:D (2.79) BS01 rna ? GO:0000027 ... P19949 36867692
    7 8b6c:D (2.79) BS02 rna ? GO:0000027 ... P19949 36867692
    8 8b6c:E (2.79) BS01 rna ? GO:0000027 ... G1SKF7 36867692
    9 8b6c:F (2.79) BS01 rna ? GO:0000463 ... G1SV32 36867692
    10 8b6c:F (2.79) BS02 rna ? GO:0000463 ... G1SV32 36867692
    11 8b6c:G (2.79) BS01 rna ? GO:0000470 ... G1STW0 36867692
    12 8b6c:G (2.79) BS02 rna ? GO:0000470 ... G1STW0 36867692
    13 8b6c:H (2.79) BS01 rna ? GO:0002181 ... G1SWI6 36867692
    14 8b6c:I (2.79) BS01 rna ? GO:0000027 ... B7NZQ2 36867692
    15 8b6c:I (2.79) BS02 rna ? GO:0000027 ... B7NZQ2 36867692
    16 8b6c:J (2.79) BS01 rna ? GO:0003723 ... G1TUB8 36867692
    17 8b6c:J (2.79) BS02 rna ? GO:0003723 ... G1TUB8 36867692
    18 8b6c:K (2.79) BS01 rna ? GO:0005048 ... A0A5F9CHB7 36867692
    19 8b6c:K (2.79) BS02 OWI ? GO:0005048 ... A0A5F9CHB7 36867692
    20 8b6c:L (2.79) BS01 rna ? GO:0003723 ... G1TKB3 36867692
    21 8b6c:L (2.79) BS02 rna ? GO:0003723 ... G1TKB3 36867692
    22 8b6c:M (2.79) BS01 rna ? GO:0003723 ... G1SZ12 36867692
    23 8b6c:N (2.79) BS01 rna ? GO:0002181 ... G1T0C1 36867692
    24 8b6c:N (2.79) BS02 rna ? GO:0002181 ... G1T0C1 36867692
    25 8b6c:O (2.79) BS01 rna ? GO:0003729 ... G1TVS8 36867692
    26 8b6c:P (2.79) BS01 rna ? GO:0003735 ... G1SCJ6 36867692
    27 8b6c:P (2.79) BS02 rna ? GO:0003735 ... G1SCJ6 36867692
    28 8b6c:Q (2.79) BS01 rna ? GO:0002181 ... G1TFE0 36867692
    29 8b6c:R (2.79) BS01 rna ? GO:0003723 ... G1TYL6 36867692
    30 8b6c:S (2.79) BS01 rna ? GO:0003735 ... G1TTY7 36867692
    31 8b6c:S (2.79) BS02 rna ? GO:0003735 ... G1TTY7 36867692
    32 8b6c:T (2.79) BS01 rna ? GO:0003735 ... G1SHQ2 36867692
    33 8b6c:T (2.79) BS02 rna ? GO:0003735 ... G1SHQ2 36867692
    34 8b6c:U (2.79) BS01 rna ? GO:0003735 ... G1TSG1 36867692
    35 8b6c:V (2.79) BS01 rna ? GO:0000122 ... G1T6D1 36867692
    36 8b6c:W (2.79) BS01 rna ? GO:0000027 ... G1SE28 36867692
    37 8b6c:X (2.79) BS01 rna ? GO:0003735 ... G1SE76 36867692
    38 8b6c:X (2.79) BS02 rna ? GO:0003735 ... G1SE76 36867692
    39 8b6c:Y (2.79) BS01 rna ? GO:0002181 ... G1SQH0 36867692
    40 8b6c:Y (2.79) BS02 rna ? GO:0002181 ... G1SQH0 36867692
    41 8b6c:Z (2.79) BS01 rna ? GO:0003735 ... G1TXF6 36867692
    42 8b6c:a (2.79) BS01 rna ? GO:0003735 ... G1SNY0 36867692
    43 8b6c:b (2.79) BS01 rna ? GO:0002181 ... G1SGR6 36867692
    44 8b6c:c (2.79) BS01 rna ? GO:0003723 ... G1TDL2 36867692
    45 8b6c:d (2.79) BS01 rna ? GO:0003735 ... G1SHG0 36867692
    46 8b6c:e (2.79) BS01 rna ? GO:0003735 ... G1TUN8 36867692
    47 8b6c:f (2.79) BS01 rna ? GO:0000049 ... G1SF08 36867692
    48 8b6c:g (2.79) BS01 rna ? GO:0003735 ... G1TXG5 36867692
    49 8b6c:g (2.79) BS02 ZN ? GO:0003735 ... G1TXG5 36867692
    50 8b6c:h (2.79) BS01 rna ? GO:0000463 ... G1SIT5 36867692
    51 8b6c:h (2.79) BS02 rna ? GO:0000463 ... G1SIT5 36867692
    52 8b6c:i (2.79) BS01 rna ? GO:0002181 ... G1TTQ5 36867692
    53 8b6c:j (2.79) BS01 rna ? GO:0003735 ... U3KPD5 36867692
    54 8b6c:j (2.79) BS02 rna ? GO:0003735 ... U3KPD5 36867692
    55 8b6c:j (2.79) BS03 ZN ? GO:0003735 ... U3KPD5 36867692
    56 8b6c:k (2.79) BS01 rna ? GO:0003735 ... G1U001 36867692
    57 8b6c:l (2.79) BS01 rna ? GO:0003735 ... G1TTN1 36867692
    58 8b6c:l (2.79) BS02 rna ? GO:0003735 ... G1TTN1 36867692
    59 8b6c:m (2.79) BS01 rna ? GO:0003735 ... P0DXC2 36867692
    60 8b6c:m (2.79) BS02 ZN ? GO:0003735 ... P0DXC2 36867692
    61 8b6c:o (2.79) BS01 rna ? GO:0003735 ... G1T040 36867692
    62 8b6c:o (2.79) BS02 ZN ? GO:0003735 ... G1T040 36867692
    63 8b6c:p (2.79) BS01 rna ? GO:0003735 ... G1SY53 36867692
    64 8b6c:p (2.79) BS02 ZN ? GO:0003735 ... G1SY53 36867692
    65 8b6c:r (2.79) BS01 rna ? GO:0003735 ... G1U7L1 36867692
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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