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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ana:0 (2.1) BS01 rna ? GO:0000027 ... P0A7N9 36997646
    2 8ana:1 (2.1) BS01 rna ? GO:0002181 ... P0A7P5 36997646
    3 8ana:2 (2.1) BS01 rna ? GO:0002181 ... P0A7Q1 36997646
    4 8ana:3 (2.1) BS01 rna ? GO:0002181 ... P0A7Q6 36997646
    5 8ana:3 (2.1) BS02 ZN ? GO:0002181 ... P0A7Q6 36997646
    6 8ana:4 (2.1) BS01 rna ? GO:0002181 ... P0A7M9 36997646
    7 8ana:4 (2.1) BS02 ZN ? GO:0002181 ... P0A7M9 36997646
    8 8ana:c (2.1) BS01 rna ? GO:0000027 ... P60422 36997646
    9 8ana:d (2.1) BS01 rna ? GO:0000027 ... P60438 36997646
    10 8ana:e (2.1) BS01 peptide ? GO:0001070 ... P60723 36997646
    11 8ana:e (2.1) BS02 rna ? GO:0001070 ... P60723 36997646
    12 8ana:f (2.1) BS01 rna ? GO:0000027 ... P62399 36997646
    13 8ana:f (2.1) BS02 rna ? GO:0000027 ... P62399 36997646
    14 8ana:g (2.1) BS01 rna ? GO:0000027 ... P0AG55 36997646
    15 8ana:h (2.1) BS01 rna ? GO:0002181 ... P0A7R1 36997646
    16 8ana:i (2.1) BS01 rna ? GO:0002181 ... P0AA10 36997646
    17 8ana:j (2.1) BS01 rna ? GO:0002181 ... P0ADY3 36997646
    18 8ana:k (2.1) BS01 rna ? GO:0002181 ... P02413 36997646
    19 8ana:l (2.1) BS01 rna ? GO:0000027 ... P0ADY7 36997646
    20 8ana:l (2.1) BS02 rna ? GO:0000027 ... P0ADY7 36997646
    21 8ana:m (2.1) BS01 rna ? GO:0000027 ... P0AG44 36997646
    22 8ana:n (2.1) BS01 rna ? GO:0002181 ... P0C018 36997646
    23 8ana:n (2.1) BS02 rna ? GO:0002181 ... P0C018 36997646
    24 8ana:o (2.1) BS01 rna ? GO:0000027 ... P0A7K6 36997646
    25 8ana:p (2.1) BS01 rna ? GO:0000027 ... P0A7L3 36997646
    26 8ana:q (2.1) BS01 rna ? GO:0002181 ... P0AG48 36997646
    27 8ana:r (2.1) BS01 peptide ? GO:0002181 ... P61175 36997646
    28 8ana:r (2.1) BS02 rna ? GO:0002181 ... P61175 36997646
    29 8ana:s (2.1) BS01 rna ? GO:0000027 ... P0ADZ0 36997646
    30 8ana:t (2.1) BS01 rna ? GO:0000027 ... P60624 36997646
    31 8ana:u (2.1) BS01 rna ? GO:0000027 ... P68919 36997646
    32 8ana:u (2.1) BS02 rna ? GO:0000027 ... P68919 36997646
    33 8ana:v (2.1) BS01 rna ? GO:0000027 ... P0A7L8 36997646
    34 8ana:v (2.1) BS02 rna ? GO:0000027 ... P0A7L8 36997646
    35 8ana:w (2.1) BS01 rna ? GO:0000027 ... P0A7M2 36997646
    36 8ana:x (2.1) BS01 rna ? GO:0000027 ... P0A7M6 36997646
    37 8ana:y (2.1) BS01 rna ? GO:0000027 ... P0AG51 36997646
    38 8ana:y (2.1) BS02 rna ? GO:0000027 ... P0AG51 36997646
    39 8ana:z (2.1) BS01 rna ? GO:0000027 ... P0A7N4 36997646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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