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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8age:A (2.8) BS01 peptide 2.4.99.18 GO:0004576 ... P39007 36435935
    2 8age:A (2.8) BS02 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    3 8age:A (2.8) BS03 MG 2.4.99.18 GO:0004576 ... P39007 36435935
    4 8age:A (2.8) BS04 KZB 2.4.99.18 GO:0004576 ... P39007 36435935
    5 8age:A (2.8) BS05 KZB 2.4.99.18 GO:0004576 ... P39007 36435935
    6 8age:A (2.8) BS06 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    7 8age:A (2.8) BS07 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    8 8age:A (2.8) BS08 323 2.4.99.18 GO:0004576 ... P39007 36435935
    9 8age:B (2.8) BS01 CPL ? GO:0005515 ... Q99380 36435935
    10 8age:C (2.8) BS01 CPL ? GO:0005198 ... Q92316 36435935
    11 8age:E (2.8) BS01 CPL ? GO:0006486 ... P41543 36435935
    12 8age:F (2.8) BS01 CPL ? GO:0006487 ... Q02795 36435935
    13 8age:G (2.8) BS01 KZB ? GO:0005789 ... P33767 36435935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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