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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ylx:A (3.2) BS01 ADP ? GO:0005515 ... P12612 36921056
    2 7ylx:A (3.2) BS02 AF3 ? GO:0005515 ... P12612 36921056
    3 7ylx:B (3.2) BS01 ADP ? GO:0005515 ... P39076 36921056
    4 7ylx:B (3.2) BS02 AF3 ? GO:0005515 ... P39076 36921056
    5 7ylx:D (3.2) BS01 ADP ? GO:0005524 ... P39078 36921056
    6 7ylx:D (3.2) BS02 MG ? GO:0005524 ... P39078 36921056
    7 7ylx:D (3.2) BS03 AF3 ? GO:0005524 ... P39078 36921056
    8 7ylx:E (3.2) BS01 ADP ? GO:0005524 ... P40413 36921056
    9 7ylx:E (3.2) BS02 AF3 ? GO:0005524 ... P40413 36921056
    10 7ylx:G (3.2) BS01 ADP ? GO:0005524 ... P39077 36921056
    11 7ylx:G (3.2) BS02 AF3 ? GO:0005524 ... P39077 36921056
    12 7ylx:H (3.2) BS01 ADP ? GO:0005524 ... P42943 36921056
    13 7ylx:H (3.2) BS02 AF3 ? GO:0005524 ... P42943 36921056
    14 7ylx:Q (3.2) BS01 ADP ? GO:0005524 ... P47079 36921056
    15 7ylx:Z (3.2) BS01 ADP ? GO:0005524 ... P39079 36921056
    16 7ylx:Z (3.2) BS02 AF3 ? GO:0005524 ... P39079 36921056
    17 7ylx:a (3.2) BS01 ADP ? GO:0005515 ... P12612 36921056
    18 7ylx:a (3.2) BS02 AF3 ? GO:0005515 ... P12612 36921056
    19 7ylx:b (3.2) BS01 ADP ? GO:0005515 ... P39076 36921056
    20 7ylx:b (3.2) BS02 AF3 ? GO:0005515 ... P39076 36921056
    21 7ylx:d (3.2) BS01 ADP ? GO:0005524 ... P39078 36921056
    22 7ylx:d (3.2) BS02 MG ? GO:0005524 ... P39078 36921056
    23 7ylx:d (3.2) BS03 AF3 ? GO:0005524 ... P39078 36921056
    24 7ylx:e (3.2) BS01 ADP ? GO:0005524 ... P40413 36921056
    25 7ylx:e (3.2) BS02 AF3 ? GO:0005524 ... P40413 36921056
    26 7ylx:g (3.2) BS01 ADP ? GO:0005524 ... P39077 36921056
    27 7ylx:g (3.2) BS02 AF3 ? GO:0005524 ... P39077 36921056
    28 7ylx:h (3.2) BS01 ADP ? GO:0005524 ... P42943 36921056
    29 7ylx:h (3.2) BS02 AF3 ? GO:0005524 ... P42943 36921056
    30 7ylx:q (3.2) BS01 ADP ? GO:0005524 ... P47079 36921056
    31 7ylx:z (3.2) BS01 ADP ? GO:0005524 ... P39079 36921056
    32 7ylx:z (3.2) BS02 AF3 ? GO:0005524 ... P39079 36921056
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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