Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7w59:A (3.6) BS01 rna ? GO:0000244 ... Q6P2Q9 35705093
    2 7w59:A (3.6) BS02 rna ? GO:0000244 ... Q6P2Q9 35705093
    3 7w59:A (3.6) BS03 rna ? GO:0000244 ... Q6P2Q9 35705093
    4 7w59:A (3.6) BS04 rna ? GO:0000244 ... Q6P2Q9 35705093
    5 7w59:A (3.6) BS05 rna ? GO:0000244 ... Q6P2Q9 35705093
    6 7w59:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    7 7w59:C (3.6) BS01 rna ? GO:0000398 ... Q15029 35705093
    8 7w59:C (3.6) BS02 GTP ? GO:0000398 ... Q15029 35705093
    9 7w59:J (3.6) BS01 rna ? GO:0000245 ... Q9BZJ0 35705093
    10 7w59:L (3.6) BS01 rna ? GO:0000077 ... Q99459 35705093
    11 7w59:L (3.6) BS02 rna ? GO:0000077 ... Q99459 35705093
    12 7w59:M (3.6) BS01 rna ? GO:0000398 ... O95926 35705093
    13 7w59:M (3.6) BS02 rna ? GO:0000398 ... O95926 35705093
    14 7w59:N (3.6) BS01 rna ? GO:0000398 ... P41223 35705093
    15 7w59:N (3.6) BS02 ZN ? GO:0000398 ... P41223 35705093
    16 7w59:N (3.6) BS03 ZN ? GO:0000398 ... P41223 35705093
    17 7w59:N (3.6) BS04 ZN ? GO:0000398 ... P41223 35705093
    18 7w59:O (3.6) BS01 rna ? GO:0000398 ... Q9NW64 35705093
    19 7w59:O (3.6) BS02 rna ? GO:0000398 ... Q9NW64 35705093
    20 7w59:O (3.6) BS03 ZN ? GO:0000398 ... Q9NW64 35705093
    21 7w59:O (3.6) BS04 ZN ? GO:0000398 ... Q9NW64 35705093
    22 7w59:O (3.6) BS05 ZN ? GO:0000398 ... Q9NW64 35705093
    23 7w59:P (3.6) BS01 rna ? GO:0000398 ... Q9P013 35705093
    24 7w59:P (3.6) BS02 rna ? GO:0000398 ... Q9P013 35705093
    25 7w59:P (3.6) BS03 rna ? GO:0000398 ... Q9P013 35705093
    26 7w59:Q (3.6) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    27 7w59:R (3.6) BS01 rna ? GO:0000122 ... Q13573 35705093
    28 7w59:R (3.6) BS02 rna ? GO:0000122 ... Q13573 35705093
    29 7w59:U (3.6) BS01 rna ? GO:0000398 ... Q9UQ35 35705093
    30 7w59:W (3.6) BS01 rna ? GO:0000398 ... O60508 35705093
    31 7w59:W (3.6) BS02 rna ? GO:0000398 ... O60508 35705093
    32 7w59:X (3.6) BS01 rna ? GO:0005515 ... Q9GZU8 35705093
    33 7w59:a (3.6) BS01 rna ? GO:0000243 ... P62318 35705093
    34 7w59:b (3.6) BS01 rna ? GO:0000387 ... P14678 35705093
    35 7w59:c (3.6) BS01 rna ? GO:0000243 ... P62314 35705093
    36 7w59:d (3.6) BS01 rna ? GO:0000245 ... P62316 35705093
    37 7w59:e (3.6) BS01 rna ? GO:0000245 ... P62304 35705093
    38 7w59:f (3.6) BS01 rna ? GO:0000387 ... P62306 35705093
    39 7w59:g (3.6) BS01 rna ? GO:0000245 ... P62308 35705093
    40 7w59:h (3.6) BS01 rna ? GO:0000243 ... P62318 35705093
    41 7w59:i (3.6) BS01 rna ? GO:0000387 ... P14678 35705093
    42 7w59:j (3.6) BS01 rna ? GO:0000243 ... P62314 35705093
    43 7w59:k (3.6) BS01 rna ? GO:0000245 ... P62316 35705093
    44 7w59:l (3.6) BS01 rna ? GO:0000245 ... P62304 35705093
    45 7w59:m (3.6) BS01 rna ? GO:0000387 ... P62306 35705093
    46 7w59:n (3.6) BS01 rna ? GO:0000245 ... P62308 35705093
    47 7w59:p (3.6) BS01 rna ? GO:0000398 ... P08579 35705093
    48 7w59:y (3.6) BS01 rna 5.2.1.8 GO:0000398 ... Q9UNP9 35705093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218