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BioLiP
Download all results in tab-seperated text for 84 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rmo:A (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    2 7rmo:A (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    3 7rmo:A (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    4 7rmo:B (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    5 7rmo:B (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    6 7rmo:B (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    7 7rmo:C (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    8 7rmo:C (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    9 7rmo:C (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    10 7rmo:D (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    11 7rmo:D (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    12 7rmo:D (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    13 7rmo:E (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    14 7rmo:E (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    15 7rmo:E (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    16 7rmo:F (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    17 7rmo:F (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    18 7rmo:F (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    19 7rmo:G (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    20 7rmo:G (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    21 7rmo:G (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    22 7rmo:H (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    23 7rmo:H (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    24 7rmo:H (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    25 7rmo:I (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    26 7rmo:I (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    27 7rmo:I (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    28 7rmo:J (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    29 7rmo:J (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    30 7rmo:J (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    31 7rmo:K (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    32 7rmo:K (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    33 7rmo:K (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    34 7rmo:L (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    35 7rmo:L (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    36 7rmo:L (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    37 7rmo:M (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    38 7rmo:M (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    39 7rmo:M (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    40 7rmo:N (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    41 7rmo:N (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    42 7rmo:N (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    43 7rmo:O (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    44 7rmo:O (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    45 7rmo:O (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    46 7rmo:P (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    47 7rmo:P (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    48 7rmo:P (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    49 7rmo:Q (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    50 7rmo:Q (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    51 7rmo:Q (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    52 7rmo:R (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    53 7rmo:R (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    54 7rmo:R (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    55 7rmo:S (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    56 7rmo:S (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    57 7rmo:S (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    58 7rmo:T (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    59 7rmo:T (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    60 7rmo:T (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    61 7rmo:U (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    62 7rmo:U (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    63 7rmo:U (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    64 7rmo:V (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    65 7rmo:V (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    66 7rmo:V (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    67 7rmo:W (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    68 7rmo:W (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    69 7rmo:W (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    70 7rmo:X (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    71 7rmo:X (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    72 7rmo:X (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    73 7rmo:Y (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    74 7rmo:Y (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    75 7rmo:Y (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    76 7rmo:Z (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    77 7rmo:Z (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    78 7rmo:Z (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    79 7rmo:a (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    80 7rmo:a (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    81 7rmo:a (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    82 7rmo:b (7.0) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    83 7rmo:b (7.0) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    84 7rmo:b (7.0) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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