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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rmc:D (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    2 7rmc:D (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    3 7rmc:D (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    4 7rmc:D (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    5 7rmc:E (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    6 7rmc:E (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    7 7rmc:E (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    8 7rmc:E (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    9 7rmc:F (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    10 7rmc:F (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    11 7rmc:F (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    12 7rmc:F (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    13 7rmc:Q (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    14 7rmc:Q (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    15 7rmc:Q (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    16 7rmc:Q (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    17 7rmc:R (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    18 7rmc:R (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    19 7rmc:R (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    20 7rmc:R (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    21 7rmc:S (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    22 7rmc:S (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    23 7rmc:S (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    24 7rmc:S (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    25 7rmc:T (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    26 7rmc:T (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    27 7rmc:T (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    28 7rmc:T (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    29 7rmc:U (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    30 7rmc:U (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    31 7rmc:U (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    32 7rmc:U (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    33 7rmc:V (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    34 7rmc:V (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    35 7rmc:V (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    36 7rmc:V (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    37 7rmc:W (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    38 7rmc:W (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    39 7rmc:W (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    40 7rmc:W (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    41 7rmc:g (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    42 7rmc:g (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    43 7rmc:g (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    44 7rmc:g (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    45 7rmc:h (3.5) BS01 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    46 7rmc:h (3.5) BS02 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    47 7rmc:h (3.5) BS03 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    48 7rmc:h (3.5) BS04 CTP 6.3.4.2 GO:0000324 ... P28274 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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