Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qv7:A (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    2 7qv7:A (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    3 7qv7:A (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    4 7qv7:A (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    5 7qv7:B (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    6 7qv7:B (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    7 7qv7:B (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    8 7qv7:B (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    9 7qv7:C (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    10 7qv7:C (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    11 7qv7:C (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    12 7qv7:C (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    13 7qv7:D (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    14 7qv7:D (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    15 7qv7:D (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    16 7qv7:D (3.4) BS04 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    17 7qv7:G (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    18 7qv7:G (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    19 7qv7:G (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    20 7qv7:G (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATJ9 35859174
    21 7qv7:J (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    22 7qv7:J (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    23 7qv7:J (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    24 7qv7:J (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    25 7qv7:K (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    26 7qv7:K (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    27 7qv7:K (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    28 7qv7:K (3.4) BS04 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    29 7qv7:N (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    30 7qv7:N (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    31 7qv7:N (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    32 7qv7:N (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    33 7qv7:P (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    34 7qv7:P (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    35 7qv7:P (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    36 7qv7:P (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    37 7qv7:Q (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    38 7qv7:Q (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    39 7qv7:Q (3.4) BS03 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    40 7qv7:Q (3.4) BS04 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    41 7qv7:R (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    42 7qv7:R (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    43 7qv7:R (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    44 7qv7:R (3.4) BS04 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    45 7qv7:S (3.4) BS01 SF4 1.2.1.2 GO:0008863 ... A0A097ATK5 35859174
    46 7qv7:V (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    47 7qv7:V (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    48 7qv7:V (3.4) BS03 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    49 7qv7:V (3.4) BS04 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    50 7qv7:X (3.4) BS01 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    51 7qv7:X (3.4) BS02 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    52 7qv7:X (3.4) BS03 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    53 7qv7:X (3.4) BS04 SF4 1.-.-.- GO:0016491 ... A0A097ATK6 35859174
    54 7qv7:Y (3.4) BS01 SF4 1.2.1.2 GO:0008863 ... A0A097ATK5 35859174
    55 7qv7:Z (3.4) BS01 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    56 7qv7:Z (3.4) BS02 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    57 7qv7:Z (3.4) BS03 SF4 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    58 7qv7:Z (3.4) BS04 402 1.12.7.2 GO:0005506 ... A0A097ATH7 35859174
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218