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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qix:E (2.53) BS01 rna ? GO:0000028 ... A0A3Q7H1U4 35643637
    2 7qix:F (2.53) BS01 rna ? GO:0003735 ... A0A3Q7I881 35643637
    3 7qix:G (2.53) BS01 rna ? GO:0003723 ... A0A3Q7F1W7 35643637
    4 7qix:H (2.53) BS01 rna ? GO:0003735 ... A0A3Q7H0E8 35643637
    5 7qix:I (2.53) BS01 rna ? GO:0000462 ... A0A3Q7HJ03 35643637
    6 7qix:J (2.53) BS01 rna ? GO:0003735 ... A0A3Q7GZI4 35643637
    7 7qix:L (2.53) BS01 rna ? GO:0000447 ... A0A3Q7G7P4 35643637
    8 7qix:M (2.53) BS01 rna ? GO:0003735 ... K4D3L7 35643637
    9 7qix:N (2.53) BS01 rna ? GO:0003729 ... A0A3Q7GRY8 35643637
    10 7qix:N (2.53) BS02 ZN ? GO:0003729 ... A0A3Q7GRY8 35643637
    11 7qix:O (2.53) BS01 rna ? GO:0003723 ... A0A3Q7G7F0 35643637
    12 7qix:P (2.53) BS01 rna ? GO:0003735 ... A0A3Q7HSH1 35643637
    13 7qix:Q (2.53) BS01 rna ? GO:0003723 ... K4ATQ2 35643637
    14 7qix:R (2.53) BS01 rna ? GO:0003735 ... K4CYU9 35643637
    15 7qix:S (2.53) BS01 rna ? GO:0003735 ... A0A3Q7F2G2 35643637
    16 7qix:T (2.53) BS01 rna ? GO:0003735 ... A0A1U7YEG5 35643637
    17 7qix:U (2.53) BS01 rna ? GO:0003729 ... A0A3Q7I5D6 35643637
    18 7qix:V (2.53) BS01 rna N/A GO:0003735 ... N/A 35643637
    19 7qix:W (2.53) BS01 rna ? GO:0003735 ... A0A3Q7IMP3 35643637
    20 7qix:X (2.53) BS01 rna ? GO:0003723 ... A0A3Q7GQ29 35643637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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