Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qhm:A (2.8) BS01 peptide ? GO:0005886 ... Q79VE8 35087070
    2 7qhm:A (2.8) BS02 FES ? GO:0005886 ... Q79VE8 35087070
    3 7qhm:A (2.8) BS03 IZL ? GO:0005886 ... Q79VE8 35087070
    4 7qhm:A (2.8) BS04 9YF ? GO:0005886 ... Q79VE8 35087070
    5 7qhm:A (2.8) BS05 MQ9 ? GO:0005886 ... Q79VE8 35087070
    6 7qhm:B (2.8) BS01 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    7 7qhm:B (2.8) BS02 SMA 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    8 7qhm:B (2.8) BS03 HEM 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    9 7qhm:B (2.8) BS04 HEM 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    10 7qhm:B (2.8) BS05 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    11 7qhm:B (2.8) BS06 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    12 7qhm:B (2.8) BS07 MQ9 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    13 7qhm:B (2.8) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    14 7qhm:C (2.8) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    15 7qhm:C (2.8) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    16 7qhm:D (2.8) BS01 HAS 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    17 7qhm:D (2.8) BS02 HAS 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    18 7qhm:D (2.8) BS03 CU 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    19 7qhm:D (2.8) BS04 MN 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    20 7qhm:D (2.8) BS05 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    21 7qhm:D (2.8) BS06 AZI 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    22 7qhm:D (2.8) BS07 IX7 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    23 7qhm:E (2.8) BS01 HAS 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    24 7qhm:E (2.8) BS02 CUA 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    25 7qhm:E (2.8) BS03 CUA 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    26 7qhm:H (2.8) BS01 peptide ? N/A Q8NMB4 35087070
    27 7qhm:H (2.8) BS02 HEC ? N/A Q8NMB4 35087070
    28 7qhm:H (2.8) BS03 9YF ? N/A Q8NMB4 35087070
    29 7qhm:H (2.8) BS04 IX7 ? N/A Q8NMB4 35087070
    30 7qhm:I (2.8) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    31 7qhm:I (2.8) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    32 7qhm:I (2.8) BS03 IX7 ? GO:0005886 ... Q8NP09 35087070
    33 7qhm:N (2.8) BS01 peptide ? GO:0005886 ... Q79VE8 35087070
    34 7qhm:N (2.8) BS02 MQ9 ? GO:0005886 ... Q79VE8 35087070
    35 7qhm:N (2.8) BS03 MQ9 ? GO:0005886 ... Q79VE8 35087070
    36 7qhm:N (2.8) BS04 FES ? GO:0005886 ... Q79VE8 35087070
    37 7qhm:N (2.8) BS05 IZL ? GO:0005886 ... Q79VE8 35087070
    38 7qhm:N (2.8) BS06 9YF ? GO:0005886 ... Q79VE8 35087070
    39 7qhm:N (2.8) BS07 SMA ? GO:0005886 ... Q79VE8 35087070
    40 7qhm:O (2.8) BS01 MQ9 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    41 7qhm:O (2.8) BS02 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    42 7qhm:O (2.8) BS03 SMA 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    43 7qhm:O (2.8) BS04 HEM 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    44 7qhm:O (2.8) BS05 HEM 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    45 7qhm:O (2.8) BS06 MQ9 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    46 7qhm:O (2.8) BS07 LYC 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    47 7qhm:O (2.8) BS08 9YF 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    48 7qhm:P (2.8) BS01 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    49 7qhm:P (2.8) BS02 HEC 7.1.1.8 GO:0005506 ... Q8NNK5 35087070
    50 7qhm:Q (2.8) BS01 HAS 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    51 7qhm:Q (2.8) BS02 HAS 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    52 7qhm:Q (2.8) BS03 CU 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    53 7qhm:Q (2.8) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    54 7qhm:Q (2.8) BS05 AZI 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    55 7qhm:R (2.8) BS01 HAS 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    56 7qhm:R (2.8) BS02 CUA 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    57 7qhm:R (2.8) BS03 CUA 7.1.1.9 GO:0004129 ... Q8NNK2 35087070
    58 7qhm:U (2.8) BS01 peptide ? N/A Q8NMB4 35087070
    59 7qhm:U (2.8) BS02 HEC ? N/A Q8NMB4 35087070
    60 7qhm:U (2.8) BS03 9YF ? N/A Q8NMB4 35087070
    61 7qhm:U (2.8) BS04 IX7 ? N/A Q8NMB4 35087070
    62 7qhm:V (2.8) BS01 LYC ? GO:0005886 ... Q8NP09 35087070
    63 7qhm:V (2.8) BS02 9YF ? GO:0005886 ... Q8NP09 35087070
    64 7qhm:V (2.8) BS03 IX7 ? GO:0005886 ... Q8NP09 35087070
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218