Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7otc:0 (2.9) BS01 rna ? GO:0003735 ... A0A140NAZ2 35500116
    2 7otc:1 (2.9) BS01 rna ? GO:0003735 ... A0A140N5Z7 35500116
    3 7otc:2 (2.9) BS01 rna ? GO:0003735 ... A0A140NHV0 35500116
    4 7otc:3 (2.9) BS01 rna ? GO:0003735 ... A0A140N9E3 35500116
    5 7otc:4 (2.9) BS01 rna ? GO:0003735 ... A0A140N5M6 35500116
    6 7otc:4 (2.9) BS02 ZN ? GO:0003735 ... A0A140N5M6 35500116
    7 7otc:5 (2.9) BS01 rna ? GO:0003735 ... A0A140SS71 35500116
    8 7otc:5 (2.9) BS02 ZN ? GO:0003735 ... A0A140SS71 35500116
    9 7otc:C (2.9) BS01 rna ? GO:0002181 ... A0A140N7J1 35500116
    10 7otc:C (2.9) BS02 rna ? GO:0002181 ... A0A140N7J1 35500116
    11 7otc:C (2.9) BS03 MG ? GO:0002181 ... A0A140N7J1 35500116
    12 7otc:D (2.9) BS01 rna ? GO:0003735 ... A0A140N3G7 35500116
    13 7otc:E (2.9) BS01 rna ? GO:0003735 ... A0A140N5K8 35500116
    14 7otc:F (2.9) BS01 rna ? GO:0000049 ... A0A140N5A3 35500116
    15 7otc:F (2.9) BS02 rna ? GO:0000049 ... A0A140N5A3 35500116
    16 7otc:G (2.9) BS01 rna ? GO:0002181 ... A0A140N2T1 35500116
    17 7otc:J (2.9) BS01 rna ? GO:0003729 ... A0A140N598 35500116
    18 7otc:K (2.9) BS01 rna ? GO:0003735 ... A0A140N3H4 35500116
    19 7otc:K (2.9) BS02 rna ? GO:0003735 ... A0A140N3H4 35500116
    20 7otc:L (2.9) BS01 rna ? GO:0003735 ... A0A140N711 35500116
    21 7otc:M (2.9) BS01 rna ? GO:0000049 ... A0A140N6Z2 35500116
    22 7otc:M (2.9) BS02 rna ? GO:0000049 ... A0A140N6Z2 35500116
    23 7otc:N (2.9) BS01 rna ? GO:0003735 ... A0A140N4M0 35500116
    24 7otc:O (2.9) BS01 rna ? GO:0003735 ... A0A140N4L0 35500116
    25 7otc:O (2.9) BS02 rna ? GO:0003735 ... A0A140N4L0 35500116
    26 7otc:P (2.9) BS01 rna ? GO:0003735 ... A0A140N6T7 35500116
    27 7otc:P (2.9) BS02 rna ? GO:0003735 ... A0A140N6T7 35500116
    28 7otc:Q (2.9) BS01 rna ? GO:0000027 ... A0A140NBS1 35500116
    29 7otc:R (2.9) BS01 rna ? GO:0003723 ... A0A140N5D7 35500116
    30 7otc:S (2.9) BS01 rna ? GO:0003735 ... A0A140N2S3 35500116
    31 7otc:T (2.9) BS01 rna ? GO:0000027 ... C6EGE8 35500116
    32 7otc:U (2.9) BS01 rna ? GO:0003723 ... A0A140N5L7 35500116
    33 7otc:U (2.9) BS02 MG ? GO:0003723 ... A0A140N5L7 35500116
    34 7otc:V (2.9) BS01 rna ? GO:0003723 ... A0A140N846 35500116
    35 7otc:W (2.9) BS01 rna ? GO:0003735 ... A0A140N340 35500116
    36 7otc:W (2.9) BS02 rna ? GO:0003735 ... A0A140N340 35500116
    37 7otc:X (2.9) BS01 rna ? GO:0003735 ... A0A140N3L9 35500116
    38 7otc:Y (2.9) BS01 rna ? GO:0003735 ... A0A140N7F5 35500116
    39 7otc:Z (2.9) BS01 rna ? GO:0003735 ... A0A140N7G4 35500116
    40 7otc:Z (2.9) BS02 rna ? GO:0003735 ... A0A140N7G4 35500116
    41 7otc:b (2.9) BS01 rna ? GO:0003735 ... A0A140NFK2 35500116
    42 7otc:c (2.9) BS01 rna ? GO:0003676 ... A0A140N4K1 35500116
    43 7otc:d (2.9) BS01 rna ? GO:0003723 ... A0A140N548 35500116
    44 7otc:e (2.9) BS01 rna ? GO:0003723 ... A0A140N6Z9 35500116
    45 7otc:f (2.9) BS01 rna ? GO:0003735 ... A0A140NGG7 35500116
    46 7otc:g (2.9) BS01 rna ? GO:0000028 ... A0A140N6W8 35500116
    47 7otc:h (2.9) BS01 rna ? GO:0003735 ... A0A140N537 35500116
    48 7otc:i (2.9) BS01 rna ? GO:0003723 ... A0A140N2Z9 35500116
    49 7otc:j (2.9) BS01 rna ? GO:0000049 ... A0A140N6Y5 35500116
    50 7otc:k (2.9) BS01 rna ? GO:0003735 ... A0A140N7L9 35500116
    51 7otc:l (2.9) BS01 rna ? GO:0000049 ... A0A140N4H3 35500116
    52 7otc:m (2.9) BS01 rna ? GO:0000049 ... A0A140N5B4 35500116
    53 7otc:n (2.9) BS01 rna ? GO:0003735 ... A0A140N7K8 35500116
    54 7otc:o (2.9) BS01 rna ? GO:0003735 ... A0A140N811 35500116
    55 7otc:o (2.9) BS02 rna ? GO:0003735 ... A0A140N811 35500116
    56 7otc:p (2.9) BS01 rna ? GO:0003735 ... A0A140N7D8 35500116
    57 7otc:q (2.9) BS01 rna ? GO:0003735 ... A0A140N6Z6 35500116
    58 7otc:r (2.9) BS01 rna ? GO:0003735 ... A0A140NGH1 35500116
    59 7otc:s (2.9) BS01 rna ? GO:0000028 ... A0A140N528 35500116
    60 7otc:s (2.9) BS02 rna ? GO:0000028 ... A0A140N528 35500116
    61 7otc:t (2.9) BS01 rna ? GO:0003723 ... A0A140NFU3 35500116
    62 7otc:u (2.9) BS01 rna ? GO:0003735 ... A0A140N8B4 35500116
    63 7otc:w (2.9) BS01 rna ? GO:0003746 ... A0A140N7C7 35500116
    64 7otc:w (2.9) BS02 rna ? GO:0003746 ... A0A140N7C7 35500116
    65 7otc:w (2.9) BS03 GDP ? GO:0003746 ... A0A140N7C7 35500116
    66 7otc:w (2.9) BS04 1I7 ? GO:0003746 ... A0A140N7C7 35500116
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218